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incidence

Compute, Handle, Plot and Model Incidence of Dated Events

v1.7.6 · Jun 19, 2025 · MIT + file LICENSE

Description

Provides functions and classes to compute, handle and visualise incidence from dated events for a defined time interval. Dates can be provided in various standard formats. The class 'incidence' is used to store computed incidence and can be easily manipulated, subsetted, and plotted. In addition, log-linear models can be fitted to 'incidence' objects using 'fit'. This package is part of the RECON (<https://www.repidemicsconsortium.org/>) toolkit for outbreak analysis.

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CRAN Check Status

14 OK
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r-devel-linux-x86_64-debian-clang OK
r-devel-linux-x86_64-debian-gcc OK
r-devel-linux-x86_64-fedora-clang OK
r-devel-linux-x86_64-fedora-gcc OK
r-devel-macos-arm64 OK
r-devel-windows-x86_64 OK
r-oldrel-macos-arm64 OK
r-oldrel-macos-x86_64 OK
r-oldrel-windows-x86_64 OK
r-patched-linux-x86_64 OK
r-release-linux-x86_64 OK
r-release-macos-arm64 OK
r-release-macos-x86_64 OK
r-release-windows-x86_64 OK

Check History

OK 14 OK · 0 NOTE · 0 WARNING · 0 ERROR · 0 FAILURE Mar 10, 2026

Reverse Dependencies (7)

Dependency Network

Dependencies Reverse dependencies ggplot2 aweek EpiEstim ViroReportR epiCo projections earlyR epitrix outbreaks incidence

Version History

new 1.7.6 Mar 10, 2026
updated 1.7.6 ← 1.7.5 diff Jun 18, 2025
updated 1.7.5 ← 1.7.4 diff May 30, 2024
updated 1.7.4 ← 1.7.3 diff May 14, 2024
updated 1.7.3 ← 1.7.2 diff Nov 3, 2020
updated 1.7.2 ← 1.7.1 diff Jul 23, 2020
updated 1.7.1 ← 1.7.0 diff Mar 24, 2020
updated 1.7.0 ← 1.5.4 diff Mar 13, 2019
updated 1.5.4 ← 1.5.2 diff Jan 14, 2019
updated 1.5.2 ← 1.5.0 diff Nov 29, 2018
updated 1.5.0 ← 1.4.1 diff Oct 31, 2018
updated 1.4.1 ← 1.3.1 diff Aug 23, 2018
updated 1.3.1 ← 1.3.0 diff Jun 10, 2018
updated 1.3.0 ← 1.2.1 diff May 31, 2018
updated 1.2.1 ← 1.2.0 diff Nov 11, 2017
updated 1.2.0 ← 1.1.2 diff May 14, 2017
updated 1.1.2 ← 1.1.1 diff Mar 23, 2017
updated 1.1.1 ← 1.1.0 diff Feb 14, 2017
updated 1.1.0 ← 1.0.1 diff Dec 12, 2016
updated 1.0.1 ← 1.0.0 diff Nov 22, 2016