R Observatory: Metrics for EGRETci version 2.0.5

Balamuta, James Joseph

doi:10.5281/zenodo.21843040

EGRETci

2.0.5Package record

Exploration and Graphics for RivEr Trends Confidence Intervals

0packages dependsuggested by 1

8Kdownloads / year

50.0%test coverage

11/13flavors OK

Overview

About

Maintained by Laura DeCiccoCRAN page ↗GitHub ↗Issues ↗

Collection of functions to evaluate uncertainty of results from water quality analysis using the Weighted Regressions on Time Discharge and Season (WRTDS) method. This package is an add-on to the EGRET package that performs the WRTDS analysis. The WRTDS modeling method was initially introduced and discussed in Hirsch et al. (2010) doi:10.1111/j.1752-1688.2010.00482.x, and expanded in Hirsch and De Cicco (2015) doi:10.3133/tm4A10. The paper describing the uncertainty and confidence interval calculations is Hirsch et al. (2015) doi:10.1016/j.envsoft.2015.07.017.

Changes in 2.0.5

News started!
Added run.parallel to runPairsBoot and runGroupsBoot.
Added message to "wBT" that "runPairsBoot" is preferred.
Added a function "boot_message" to allow users to view output message from the output of the bootstrapping (pairs/groups) functions.
Restructured "runPairsBoot"" and "runGroupsBoot"" so that common tasks are called by the same functions.
Slight edits to vignettes.
Changed the default value to NA for caseSetUp argument in "plotHistogramTrend""
plotConcHistBoot and plotFluxHistBoot set to default to the Sample date range instead of the Daily date range.

From NEWS in the release

Install

R (CRAN)pak (dev)Ubuntu (r2u)Fedora (COPR)openSUSE (OBS)

install.packages("EGRETci", repos = "https://cloud.r-project.org/")

Installs the current CRAN release. Prebuilt binaries on Windows and macOS.

if (!requireNamespace("pak", quietly = TRUE))
  install.packages("pak", repos = "https://cloud.r-project.org/")
pak::pak("DOI-USGS/EGRETci")

Development version from DOI-USGS/EGRETci. Installs pak first if it is not already available.

Release

# enable cranapt (r2u) if it is not already set up, then install
grep -rqs r2u.stat.illinois.edu /etc/apt/sources.list /etc/apt/sources.list.d/ \
  || curl -fsSL https://raw.githubusercontent.com/eddelbuettel/r2u/master/inst/scripts/add_cranapt_noble.sh | sudo bash
sudo apt install -y r-cran-egretci

Fast Ubuntu binaries via r2u (no compilation). The cranapt setup runs once and is skipped when it is already enabled. We list this channel from recorded r2u download activity rather than from a live index of the repository, so treat it as last known rather than guaranteed.

bspm (used by r2u) also needs make: sudo apt install make

# enable the iucar/cran COPR if it is not already present, then install
ls /etc/yum.repos.d/*iucar*cran*.repo >/dev/null 2>&1 \
  || sudo dnf copr enable -y iucar/cran
sudo dnf install -y R-CRAN-EGRETci

RPMs from the iucar/cran COPR, rebuilt from CRAN.

For install.packages() integration in R, also: sudo dnf install R-CoprManager

# add the autoCRAN OBS repo (Tumbleweed) if it is missing, then install
zypper -q lr | grep -qi autoCRAN \
  || sudo zypper addrepo https://download.opensuse.org/repositories/devel:/languages:/R:/autoCRAN/openSUSE_Tumbleweed/devel:languages:R:autoCRAN.repo
sudo zypper install -y R-EGRETci

RPMs auto-built from CRAN on openSUSE OBS (Tumbleweed). We list this channel from recorded autoCRAN download activity rather than from a live index of the repository, so treat it as last known rather than guaranteed.

Health

CRAN checks

2ERROR11OK

Check messages

ERRORtestsr-oldrel-macos-arm64, r-release-macos-arm64

r-oldrel-macos-arm64

Running ‘testthat.R’ [1s/1s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
  > library(testthat)
  > library(EGRETci)
  > test_check("EGRETci")
  Saving _problems/tests_boot_tests-113.R
  [ FAIL 1 | WARN 0 | SKIP 10 | PASS 15 ]
  
  ══ Skipped tests (10) ══════════════════════════════════════════════════════════
  • On CRAN (10): 'tests_boot_tests.R:57:3', 'tests_boot_tests.R:69:3',
    'tests_boot_tests.R:87:3', 'tests_boot_tests.R:131:3',
    'tests_boot_tests.R:150:3', 'tests_boot_tests.R:179:3', 'tests_kalman.R:4:3',
    'tests_kalman.R:21:3', 'tests_kalman.R:46:3', 'tests_kalman.R:71:3'
  
  ══ Failed tests ════════════════════════════════════════════════════════════════
  ── Failure ('tests_boot_tests.R:113:3'): paVector ──────────────────────────────
  Expected `paIndexWinter` to equal `11:13`.
  Differences:
  Lengths differ: 4 is not 3
  
  [ FAIL 1 | WARN 0 | SKIP 10 | PASS 15 ]
  Error:
  ! Test failures.
  Execution halted

r-release-macos-arm64

Running ‘testthat.R’ [0s/0s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
  > library(testthat)
  > library(EGRETci)
  > test_check("EGRETci")
  Saving _problems/tests_boot_tests-113.R
  [ FAIL 1 | WARN 0 | SKIP 10 | PASS 15 ]
  
  ══ Skipped tests (10) ══════════════════════════════════════════════════════════
  • On CRAN (10): 'tests_boot_tests.R:57:3', 'tests_boot_tests.R:69:3',
    'tests_boot_tests.R:87:3', 'tests_boot_tests.R:131:3',
    'tests_boot_tests.R:150:3', 'tests_boot_tests.R:179:3', 'tests_kalman.R:4:3',
    'tests_kalman.R:21:3', 'tests_kalman.R:46:3', 'tests_kalman.R:71:3'
  
  ══ Failed tests ════════════════════════════════════════════════════════════════
  ── Failure ('tests_boot_tests.R:113:3'): paVector ──────────────────────────────
  Expected `paIndexWinter` to equal `11:13`.
  Differences:
  Lengths differ: 4 is not 3
  
  [ FAIL 1 | WARN 0 | SKIP 10 | PASS 15 ]
  Error:
  ! Test failures.
  Execution halted

CRAN check page ↗

Slowest check: 6.1 min · r-oldrel-windows-x86_64

Status changes

ERROR11 OK, 2 ERRORNow
ERROR11 OK, 3 ERROR2026-03-10

Advisories

none known

How this is measured·How advisories are found

Documentation

In release 2.0.5

READMEYes · 441 wordsVignettesYes · 2 · dynamicNEWSYes · 33% structured · mentions 2.0.5Citation fileYes · software entry only

Help pages: 26 (4 internal)includes a package overview page
Examples that run: 100%20 run in a plain check
Exported functions with examples: 87%
Documented parameters: 100%
Return-value docs: 57%
Help pages citing references: 4%

Vignettes (2)

How these are measured

Downloads

8K

CRAN downloads in the past year

Rank #4,023 · ~22/day · ~666/mo

Releases R versions

Daily download trend is not available in this view yet.

1.3K30 days

2.3K90 days

8K1 year

Compare downloads with other packages →

Also on811 r2u7 autocran176 c2d4u

How downloads are counted

Repository

doi-usgs/egretci ↗Organization: DOI-USGS

11Stars

10Forks

3Open issues

1Open PRs

6Releases

482Commits

2Commit identities

rusgsegretbootstrapwater-quality-trendsrstatsr-package

482 commits · Last activity 2025-04-04 · 0% stars, 30d

Responsiveness

How these are sampled

PRs merged (all time): 98%
Median days to close, 50 most recently updated closed issues: 256
Median days to close, 50 most recently updated closed PRs: 0

Stars over time

2025-02-17 · 92026-07-07 · 11

How these are measured

PracticesBeta

9 development-tooling and community-health practices detected across 4 families in the upstream repository

Checks run against github.com/doi-usgs/egretci on 2026-10-22.

Continuous integration (3)

GitHub ActionsR CMD check workflowGitLab CI

The R CMD check workflow runs on macOS

Governance and community (1)

Code of conduct

Docs source (4)

README.Rmdpkgdown

GitHub Pages site last deployed 2025-04-04 · The repository has a site deploy workflow

Coverage (1)

Coverage reporting (Codecov)

How this is detected·Detection ruleset v4 (2026-10-20)

Dependencies

Declared dependencies

10 external dependencies (excludes base and recommended)

Installing EGRETci adds 58 packages (37 with compiled code, 53 MB of source tarballs). Heaviest: sf 9.3 MB, data.table 5.7 MB, dataRetrieval 4.1 MB.

Depends (1)

R >= 3.5.0

Imports (6)

EGRET binomstatsgraphicsutilsforeach

LinkingTo (0)

none

Suggests (7)

knitr testthat doParallel iterators rmarkdown pkgdown covr

Enhances (0)

none

Dependency license breakdown →

Reverse dependencies

0direct

0indirect

Suggested by 1

Suggests, most downloaded first

EGRET

How these are counted

Code & Tests

Datasets

People & History

People (4)

Laura DeCicco

Author, Maintainer since 1.0.0 (2015)

Robert Hirsch

Author

Stacey Archfield

Contributor · added in 2.0.5

Jennifer Murphy

Contributor · added in 2.0.0

Releases (7)

Pick two releases to compare their code metrics.

R
R 4.6.0 released · 2026-04-24
2.0.5Latest
record
2025-04-17 · current release · diff ↗ ·
added 4 exports
boot_message, calc_boot_out, paVector, run_bootstraps
R
R 4.5.0 released · 2025-04-11
R
R 4.4.0 released · 2024-04-24
R
R 4.3.0 released · 2023-04-21
R
R 4.2.0 released · 2022-04-22
R
R 4.1.0 released · 2021-05-18
2.0.4
record
2021-04-13 · diff ↗ ·
added 5 exports
genDailyBoot, makeAnnualPI, makeDailyPI, makeMonthPI, monthSeqToDec
R
R 4.0.0 released · 2020-04-24
R
R 3.6.0 released · 2019-04-26
2.0.3
record
2019-03-15 · diff ↗
unarchivedReturned to CRAN
2019-02-12
2.0.2
record
2019-02-12 · diff ↗
archivedRemoved from CRAN
2019-01-23
depends on archived package 'EGRET'
2.0.0
record
2018-08-16 · diff ↗ ·
removed 5 exports
estSliceSurfacesSimpleAlt, makeCombo, makeTwoYearsResults, paVector, wordLike

added 2 exports
runGroupsBoot, runPairsBoot
R
R 3.5.0 released · 2018-04-23

Show 5 earlier eventsHide 5 earlier events

R
R 3.4.0 released · 2017-04-21
R
R 3.3.0 released · 2016-05-03
1.0.2
record
2016-04-16 · diff ↗
1.0.0
record
2015-08-14
R
R 3.2.0 released · 2015-04-16

Package metadata

First published: 2015-08-14
Total releases: 7 / 11 yrs
License: CC0
Copyright: This software is in the public domain because it contains materials that originally came from the United States Geological Survey, an agency of the United States Department of Interior. For more information, see the official USGS copyright policy at hhttps://www.usgs.gov/information-policies-and-instructions/copyrights-and-credits
Minimum R: ≥ 3.5.0
Bundled data: 1.9 MB / 5 files
Download size: 3.0 MB

Appears in task views

Hydrological Data and Modeling

Cite

Cite this package

Run in R for the authors' entry:

citation("EGRETci")

The package provides a citation file, so citation() returns the authors' own entry.

Cite the R Observatory

For a number measured here: a download total, a coverage figure, an archival date.

Format

APA

Balamuta, J. J. (2026). R Observatory: Metrics for EGRETci version 2.0.5 [Data set]. HJJB, LLC. Data release v2026-10-25. https://doi.org/10.5281/zenodo.21843040

From data release v2026-10-25, which the citation names so these numbers can be found later. More on citing and the projects behind them.

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