R Observatory: Metrics for EBASE version 1.1.0

Balamuta, James Joseph

doi:10.5281/zenodo.21843040

EBASE

1.1.0

Estuarine Bayesian Single-Station Estimation Method for Ecosystem Metabolism

0packages depend

2.6Kdownloads / year

97.5%test coverage

0/13checks pass

Overview

About

Maintained by Marcus BeckFirst published 2024-03-084 releasesCRAN page ↗GitHub ↗

Estimate ecosystem metabolism in a Bayesian framework for individual water quality monitoring stations with continuous dissolved oxygen time series. A mass balance equation is used that provides estimates of parameters for gross primary production, respiration, and gas exchange. Methods adapted from Grace et al. (2015) doi:10.1002/lom3.10011 and Wanninkhof (2014) doi:10.4319/lom.2014.12.351. Details in Beck et al. (2024) doi:10.1002/lom3.10620.

Install

R (CRAN)pak (dev)Ubuntu (r2u)Fedora (COPR)openSUSE (OBS)

install.packages("EBASE", repos = "https://cloud.r-project.org/")

Installs the current CRAN release. Prebuilt binaries on Windows and macOS.

if (!requireNamespace("pak", quietly = TRUE))
  install.packages("pak", repos = "https://cloud.r-project.org/")
pak::pak("fawda123/EBASE")

Development version from fawda123/EBASE. Installs pak first if it is not already available.

Release

# enable cranapt (r2u) if it is not already set up, then install
grep -rqs r2u.stat.illinois.edu /etc/apt/sources.list /etc/apt/sources.list.d/ \
  || curl -fsSL https://raw.githubusercontent.com/eddelbuettel/r2u/master/inst/scripts/add_cranapt_noble.sh | sudo bash
sudo apt install -y r-cran-ebase

Fast Ubuntu binaries via r2u (no compilation). The cranapt setup runs once and is skipped when it is already enabled.

bspm (used by r2u) also needs make: sudo apt install make

# enable the iucar/cran COPR if it is not already present, then install
ls /etc/yum.repos.d/*iucar*cran*.repo >/dev/null 2>&1 \
  || sudo dnf copr enable -y iucar/cran
sudo dnf install -y R-CRAN-EBASE

RPMs from the iucar/cran COPR, rebuilt from CRAN.

For install.packages() integration in R, also: sudo dnf install R-CoprManager

# add the autoCRAN OBS repo (Tumbleweed) if it is missing, then install
zypper -q lr | grep -qi autoCRAN \
  || sudo zypper addrepo https://download.opensuse.org/repositories/devel:/languages:/R:/autoCRAN/openSUSE_Tumbleweed/devel:languages:R:autoCRAN.repo
sudo zypper install -y R-EBASE

RPMs auto-built from CRAN on openSUSE OBS (Tumbleweed).

Health

CRAN checks

13NOTE

Failing flavors

NOTE r-devel-linux-x86_64-debian-clang
NOTE r-devel-linux-x86_64-debian-gcc
NOTE r-devel-linux-x86_64-fedora-clang
NOTE r-devel-linux-x86_64-fedora-gcc
NOTE r-devel-windows-x86_64
NOTE r-oldrel-macos-arm64
NOTE r-oldrel-macos-x86_64
NOTE r-oldrel-windows-x86_64
NOTE r-patched-linux-x86_64
NOTE r-release-linux-x86_64
NOTE r-release-macos-arm64
NOTE r-release-macos-x86_64
NOTE r-release-windows-x86_64

Slowest check: 7.3 min · r-oldrel-windows-x86_64

Code health

Yes

Tests · ratio 0.19

97.5%

Coverage · measured lines

100%

Documentation · exports

10

Dependencies · direct

Check history

NOTE2026-07-31
0 OK · 13 NOTE · 0 WARNING · 0 ERROR · 0 FAILURE
ERROR2026-07-30
0 OK · 12 NOTE · 0 WARNING · 1 ERROR · 0 FAILURE
NOTE2026-06-29
0 OK · 13 NOTE · 0 WARNING · 0 ERROR · 0 FAILURE
ERROR2026-06-27
0 OK · 12 NOTE · 0 WARNING · 1 ERROR · 0 FAILURE
NOTE2026-06-01
0 OK · 13 NOTE · 0 WARNING · 0 ERROR · 0 FAILURE

Show 2 earlier snapshots

ERROR2026-05-30
0 OK · 12 NOTE · 0 WARNING · 1 ERROR · 0 FAILURE
NOTE2026-03-10
3 OK · 11 NOTE · 0 WARNING · 0 ERROR · 0 FAILURE

Documentation

READMEYes · 60 wordsVignettesYes · dynamicpkgdown siteNoNEWSYes · 100% structuredCode of conductNoContributing guideNo

Examples that run: 100%
Documented parameters: 100%
Return-value docs: 100%
References docs: 19%

Downloads

2.6K

CRAN downloads in the past year

Rank #16,324 · ~7/day · ~213/mo

Releases R versions

Daily download trend is not available in this view yet.

16430 days

64890 days

2.6K1 year

Compare downloads with other packages →

Also on99 r2u

Repository

GitHub ↗ fawda123/ebase

0Stars

0Forks

0Open issues

0Open PRs

4Releases

221Commits

1Contributors

metabolism

License CC0-1.0 · 221 commits · Last activity 2024-09-25

Releases over time

2024-09-25 · 42026-07-07 · 4

Repository practices

Upstream repositoryBeta

6 development-tooling and community-health practices detected across 6 families in the upstream repository

Checks run against github.com/fawda123/ebase on 2026-08-16.

Continuous integration (1)

GitHub Actions

Reproducibility and dev environment (1)

data-raw/

CRAN release process (1)

cran-comments.md

Lint, format, editor (1)

RStudio project

Show all practices

Coverage (1)

Codecov

Governance and community (1)

Issue templates

How this is detected·Detection ruleset v1 (2026-07-18)

Dependencies

Declared dependencies

14 external dependencies (excludes base and recommended)

Depends (1)

R >= 3.5

Imports (10)

doParallel dplyr foreach ggplot2 lubridate R2jags rjags tidyr truncnorm zoo

LinkingTo (0)

none

Suggests (4)

testthat knitr rmarkdown covr

Enhances (0)

none

Dependency license breakdown →

Reverse dependencies

0direct

0indirect

Nothing depends on this yet.

Code & Tests

Datasets

People & History

People (4)

Maintainer (1)

Marcus Beck

Author, Maintainer

Authors (4)

Author, Maintainer

Author

Author

Author

Package Timeline

4 releases. Pick two to compare their code metrics. R releases are shown for context.

R
R 4.6.0 released · 2026-04-24
R
R 4.5.0 released · 2025-04-11
1.1.0Latest
2024-09-25 · current release · diff ↗
1.0.2
2024-06-04 · diff ↗
R
R 4.4.0 released · 2024-04-24
1.0.1
2024-03-22 · diff ↗
1.0.0
2024-03-08
R
R 4.3.0 released · 2023-04-21

Package metadata

First published: 2024-03-08
Total releases: 4 / 2 yrs
License: CC0
Minimum R: ≥ 3.5
Bundled data: 213 KB / 2 files
Download size: 847 KB
Installed size: not tracked yet
With dependencies: not tracked yet

Cite

Cite this package

Run in R for the authors' preferred citation:

citation("EBASE")

Format

Beck, M., Arriola, J., Herrmann, M., & Najjar, R. (2024). EBASE: Estuarine Bayesian Single-Station Estimation Method for Ecosystem Metabolism (Version 1.1.0) [Computer software]. https://doi.org/10.32614/CRAN.package.EBASE

This is what citation() produces when a package has no citation file of its own. If it prints something else, use that.

Cite the R Observatory

For a number measured here: a download total, a coverage figure, an archival date.

Format

APA

Balamuta, J. J. (2026). R Observatory: Metrics for EBASE version 1.1.0 [Data set]. HJJB, LLC. Data release v2026-08-18. https://doi.org/10.5281/zenodo.21843040

From data release v2026-08-18, which the citation names so these numbers can be found later. More on citing and the projects behind them.

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