R Observatory: Metrics for DiscreteFDR version 2.1.1

Balamuta, James Joseph

doi:10.5281/zenodo.21843040

DiscreteFDR

2.1.1

FDR Based Multiple Testing Procedures with Adaptation for Discrete Tests

2packages depend

4.3Kdownloads / year

–test coverage

13/13checks pass

Overview

About

Maintained by Florian JungeFirst published 2018-07-1015 releasesCRAN page ↗GitHub ↗

Implementations of the multiple testing procedures for discrete tests described in the paper Döhler, Durand and Roquain (2018) "New FDR bounds for discrete and heterogeneous tests" doi:10.1214/18-EJS1441. The main procedures of the paper (HSU and HSD), their adaptive counterparts (AHSU and AHSD), and the HBR variant are available and are coded to take as input the results of a test procedure from package 'DiscreteTests', or a set of observed p-values and their discrete support under their nulls. A shortcut function to obtain such p-values and supports is also provided, along with a wrapper allowing to apply discrete procedures directly to data.

Install

R (CRAN)pak (dev)Ubuntu (r2u)Fedora (COPR)openSUSE (OBS)

install.packages("DiscreteFDR", repos = "https://cloud.r-project.org/")

Installs the current CRAN release. Prebuilt binaries on Windows and macOS.

if (!requireNamespace("pak", quietly = TRUE))
  install.packages("pak", repos = "https://cloud.r-project.org/")
pak::pak("DISOhda/DiscreteFDR")

Development version from DISOhda/DiscreteFDR. Installs pak first if it is not already available.

Release

# enable cranapt (r2u) if it is not already set up, then install
grep -rqs r2u.stat.illinois.edu /etc/apt/sources.list /etc/apt/sources.list.d/ \
  || curl -fsSL https://raw.githubusercontent.com/eddelbuettel/r2u/master/inst/scripts/add_cranapt_noble.sh | sudo bash
sudo apt install -y r-cran-discretefdr

Fast Ubuntu binaries via r2u (no compilation). The cranapt setup runs once and is skipped when it is already enabled.

bspm (used by r2u) also needs make: sudo apt install make

# enable the iucar/cran COPR if it is not already present, then install
ls /etc/yum.repos.d/*iucar*cran*.repo >/dev/null 2>&1 \
  || sudo dnf copr enable -y iucar/cran
sudo dnf install -y R-CRAN-DiscreteFDR

RPMs from the iucar/cran COPR, rebuilt from CRAN.

For install.packages() integration in R, also: sudo dnf install R-CoprManager

# add the autoCRAN OBS repo (Tumbleweed) if it is missing, then install
zypper -q lr | grep -qi autoCRAN \
  || sudo zypper addrepo https://download.opensuse.org/repositories/devel:/languages:/R:/autoCRAN/openSUSE_Tumbleweed/devel:languages:R:autoCRAN.repo
sudo zypper install -y R-DiscreteFDR

RPMs auto-built from CRAN on openSUSE OBS (Tumbleweed).

Health

CRAN checks

13OK

Slowest check: 4.5 min · r-devel-windows-x86_64

Code health

None

Tests · ratio 0.00

not tracked

Coverage

100%

Documentation · exports

5

Dependencies · direct

Check history

OK2026-08-05
13 OK · 0 NOTE · 0 WARNING · 0 ERROR · 0 FAILURE
NOTE2026-08-01
12 OK · 1 NOTE · 0 WARNING · 0 ERROR · 0 FAILURE
OK2026-04-22
14 OK · 0 NOTE · 0 WARNING · 0 ERROR · 0 FAILURE
ERROR2026-04-18
13 OK · 0 NOTE · 0 WARNING · 1 ERROR · 0 FAILURE
OK2026-03-10
14 OK · 0 NOTE · 0 WARNING · 0 ERROR · 0 FAILURE

Documentation

READMENoVignettesYes · dynamicpkgdown siteNoNEWSYes · 100% structuredCode of conductNoContributing guideNo

Examples that run: 100%
Documented parameters: 100%
Return-value docs: 89%
References docs: 44%

Downloads

4.3K

CRAN downloads in the past year

Rank #6,359 · ~12/day · ~362/mo

Releases R versions

Daily download trend is not available in this view yet.

62930 days

1.3K90 days

4.3K1 year

Compare downloads with other packages →

Also on432 r2u16 autocran22 c2d4u

Repository

GitHub ↗ disohda/discretefdr

4Stars

0Forks

0Open issues

0Open PRs

3Releases

119Commits

1Contributors

119 commits · Last activity 2026-05-18 · 0% stars, 30d

Stars over time

2024-12-04 · 32026-07-07 · 4

Repository practices

Upstream repositoryBeta

3 development-tooling and community-health practices detected across 3 families in the upstream repository

Checks run against github.com/disohda/discretefdr on 2026-08-16.

Continuous integration (1)

GitHub Actions

CRAN release process (1)

cran-comments.md

Lint, format, editor (1)

RStudio project

How this is detected·Detection ruleset v1 (2026-07-18)

Dependencies

Declared dependencies

11 external dependencies (excludes base and recommended)

Depends (1)

R >= 3.00

Imports (5)

Rcpp DiscreteTests lifecycle checkmate DiscreteDatasets

LinkingTo (2)

Rcpp RcppArmadillo

Suggests (4)

rmarkdown knitr R.rsp kableExtra

Enhances (0)

none

Dependency license breakdown →

Reverse dependencies

2direct

0indirect

DiscreteFWER FDX

Code & Tests

People & History

People (5)

Maintainer (1)

Florian Junge

Author, Contributor, Maintainer

Authors (3)

Florian Junge

Author, Contributor, Maintainer

Guillermo Durand

Author, Contributor

Sebastian Döhler

Author, Contributor

Contributors (5)

Florian Junge

Author, Contributor, Maintainer

Guillermo Durand

Author, Contributor

Sebastian Döhler

Author, Contributor

Christina Kihn

Contributor · added in 1.3.7

Etienne Roquain

Contributor

Package Timeline

15 releases. Pick two to compare their code metrics. R releases are shown for context.

R
R 4.6.0 released · 2026-04-24
2.1.1Latest
2026-02-13 · current release · diff ↗
R
R 4.5.0 released · 2025-04-11
2.1.0
2024-12-14 · diff ↗
2.0.1
2024-10-24 · diff ↗
2.0.0
2024-07-08 · diff ↗
R
R 4.4.0 released · 2024-04-24
1.3.7
2024-02-09 · diff ↗
R
R 4.3.0 released · 2023-04-21
R
R 4.2.0 released · 2022-04-22
1.3.6
2021-09-03 · diff ↗
1.3.5
2021-05-25 · diff ↗
R
R 4.1.0 released · 2021-05-18
R
R 4.0.0 released · 2020-04-24
1.3-4
2020-02-14 · diff ↗
1.3-3
2019-11-16 · diff ↗

Show 8 earlier events

1.3-2
2019-11-13 · diff ↗
1.3-1
2019-07-14 · diff ↗
1.3
2019-07-12 · diff ↗
R
R 3.6.0 released · 2019-04-26
1.2
2019-01-07 · diff ↗
1.1
2018-09-12 · diff ↗
1.0
2018-07-10
R
R 3.5.0 released · 2018-04-23

Package metadata

First published: 2018-07-10
Total releases: 15 / 8 yrs
License: GPL-3 OSI
Minimum R: ≥ 3.00
Download size: 972 KB
Installed size: not tracked yet
With dependencies: not tracked yet

Appears in task views

Genomics, Proteomics, Metabolomics, Transcriptomics, and Other Omics

Cite

Cite this package

Run in R for the authors' preferred citation:

citation("DiscreteFDR")

Format

Junge, F., Durand, G., Döhler, S., Kihn, C., & Roquain, E. (2026). DiscreteFDR: FDR Based Multiple Testing Procedures with Adaptation for Discrete Tests (Version 2.1.1) [Computer software]. https://doi.org/10.32614/CRAN.package.DiscreteFDR

This is what citation() produces when a package has no citation file of its own. If it prints something else, use that.

Cite the R Observatory

For a number measured here: a download total, a coverage figure, an archival date.

Format

APA

Balamuta, J. J. (2026). R Observatory: Metrics for DiscreteFDR version 2.1.1 [Data set]. HJJB, LLC. Data release v2026-08-18. https://doi.org/10.5281/zenodo.21843040

From data release v2026-08-18, which the citation names so these numbers can be found later. More on citing and the projects behind them.

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