Swarm Intelligence for Self-Organized Clustering
Overview
Algorithms implementing populations of agents that interact with one another and sense their environment may exhibit emergent behavior such as self-organization and swarm intelligence. Here, a swarm system called Databionic swarm (DBS) is introduced which was published in Thrun, M.C., Ultsch A.: "Swarm Intelligence for Self-Organized Clustering" (2020), Artificial Intelligence, DOI:10.1016/j.artint.2020.103237. DBS is able to adapt itself to structures of high-dimensional data such as natural clusters characterized by distance and/or density based structures in the data space. The first module is the parameter-free projection method called Pswarm (Pswarm()), which exploits the concepts of self-organization and emergence, game theory, swarm intelligence and symmetry considerations. The second module is the parameter-free high-dimensional data visualization technique, which generates projected points on the topographic map with hypsometric tints defined by the generalized U-matrix (GeneratePswarmVisualization()). The third module is the clustering method itself with non-critical parameters (DBSclustering()). Clustering can be verified by the visualization and vice versa. The term DBS refers to the method as a whole. It enables even a non-professional in the field of data mining to apply its algorithms for visualization and/or clustering to data sets with completely different structures drawn from diverse research fields. The comparison to common projection methods can be found in the book of Thrun, M.C.: "Projection Based Clustering through Self-Organization and Swarm Intelligence" (2018) DOI:10.1007/978-3-658-20540-9.
- Major update to efficient parallelized CPU version of the central algorithm Pswarm.
From inst/NEWS in the release
Install
Health
NOTERd contentsr-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc
Rd files without \usage: ‘setRmin.Rd’ ‘setdiffMatrix.Rd’ \arguments should not be documented without \usage.
- NOTE11 OK, 2 NOTENow
- NOTE12 OK, 1 NOTE2026-07-11
- OK12 OK2026-04-25
- NOTE11 OK, 3 NOTE2026-04-22
- ERROR10 OK, 3 NOTE, 1 ERROR2026-04-18
- NOTE11 OK, 3 NOTE2026-03-10
Documentation
- Help pages
- 32includes a package overview page
- Examples that run
- 92%11 run in a plain check · 1 only when donttest examples are enabled (R CMD check --as-cran)
- Exported functions with examples
- 62%
- Documented parameters
- 100%
- Return-value docs
- 100%
- Help pages citing references
- 84%
Downloads
Repository
- PRs merged (all time)
- 0%
- Median days to close, 50 most recently updated closed issues
- not measured
- Median days to close, 50 most recently updated closed PRs
- 42
Stars over time
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Releases over time
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1 development-tooling and community-health practice detected across 1 family in the upstream repository
Checks run against github.com/mthrun/databionicswarm on 2026-10-18.
Dependencies
Installing DatabionicSwarm adds 24 packages (12 with compiled code, 18 MB of source tarballs). Heaviest: ggplot2 6.0 MB, Rcpp 1.8 MB, isoband 1.5 MB.
Code & Tests
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- RR 4.6.0 released · 2026-04-24
- RR 4.5.0 released · 2025-04-11
- 2.0.0Latest
- RR 4.4.0 released · 2024-04-24
- 1.2.12023-10-13 · diff ↗ ·
removed 4 exports
ClusteringAccuracy, DelaunayClassificationError, RobustNormalization, RobustNorm_BackTrafo - 1.2.02023-05-30 · diff ↗
- RR 4.3.0 released · 2023-04-21
- 1.1.6
- RR 4.2.0 released · 2022-04-22
- RR 4.1.0 released · 2021-05-18
- 1.1.52021-01-12 · diff ↗
- RR 4.0.0 released · 2020-04-24
- 1.1.32020-02-03 · diff ↗
- 1.1.2
- RR 3.6.0 released · 2019-04-26
- 1.1.12019-01-27 · diff ↗
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Package metadata
- First published
- 2017-08-20
- Total releases
- 14 / 9 yrs
- License
- GPL-3 OSI
- Minimum R
- ≥ 3.0
- Bundled data
- 18 KB / 3 files
- Download size
- 1.0 MB
Cite
Cite this package
Run in R for the authors' entry:
citation("DatabionicSwarm")The package provides a citation file, so citation() returns the authors' own entry.
It points to 10.1007/978-3-658-20540-9.
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From data release v2026-10-21, which the citation names so these numbers can be found later. More on citing and the projects behind them.