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DatabionicSwarm

2.0.0Package record

Swarm Intelligence for Self-Organized Clustering

2packages dependsuggested by 2
5Kdownloads / year
–test coverage
11/13flavors OK

Overview

About

Algorithms implementing populations of agents that interact with one another and sense their environment may exhibit emergent behavior such as self-organization and swarm intelligence. Here, a swarm system called Databionic swarm (DBS) is introduced which was published in Thrun, M.C., Ultsch A.: "Swarm Intelligence for Self-Organized Clustering" (2020), Artificial Intelligence, DOI:10.1016/j.artint.2020.103237. DBS is able to adapt itself to structures of high-dimensional data such as natural clusters characterized by distance and/or density based structures in the data space. The first module is the parameter-free projection method called Pswarm (Pswarm()), which exploits the concepts of self-organization and emergence, game theory, swarm intelligence and symmetry considerations. The second module is the parameter-free high-dimensional data visualization technique, which generates projected points on the topographic map with hypsometric tints defined by the generalized U-matrix (GeneratePswarmVisualization()). The third module is the clustering method itself with non-critical parameters (DBSclustering()). Clustering can be verified by the visualization and vice versa. The term DBS refers to the method as a whole. It enables even a non-professional in the field of data mining to apply its algorithms for visualization and/or clustering to data sets with completely different structures drawn from diverse research fields. The comparison to common projection methods can be found in the book of Thrun, M.C.: "Projection Based Clustering through Self-Organization and Swarm Intelligence" (2018) DOI:10.1007/978-3-658-20540-9.

Changes in 2.0.0
  • Major update to efficient parallelized CPU version of the central algorithm Pswarm.

From inst/NEWS in the release

Install

Health

CRAN checks
2NOTE11OK
Check messages
NOTERd contentsr-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc
Rd files without \usage:
  ‘setRmin.Rd’ ‘setdiffMatrix.Rd’
\arguments should not be documented without \usage.

CRAN check page ↗

Slowest check: 6.2 min · r-devel-windows-x86_64
Status changes
  • NOTE11 OK, 2 NOTENow
  • NOTE12 OK, 1 NOTE2026-07-11
  • OK12 OK2026-04-25
  • NOTE11 OK, 3 NOTE2026-04-22
  • ERROR10 OK, 3 NOTE, 1 ERROR2026-04-18
  • NOTE11 OK, 3 NOTE2026-03-10
Advisories

none known

Documentation

In release 2.0.0
READMENoVignettesYes · 1 · staticNEWSYes · 67% structured · mentions 2.0.0Citation fileYes · cites a publicationWebsiteYes
Help pages
32includes a package overview page
Examples that run
92%11 run in a plain check · 1 only when donttest examples are enabled (R CMD check --as-cran)
Exported functions with examples
62%
Documented parameters
100%
Return-value docs
100%
Help pages citing references
84%

Downloads

5K
CRAN downloads in the past year
Rank #6,071 · ~14/day · ~417/mo
Daily download trend is not available in this view yet.
54630 days
1.4K90 days
5K1 year
Compare downloads with other packages →
Also on408 r2u31 autocran71 c2d4u

Repository

12Stars
2Forks
1Open issues
0Open PRs
2Releases
96Commits
2Commit identities
96 commits · Last activity 2023-10-30 · The default branch showed an older version (1.3.0) than CRAN on 2026-10-18
Responsiveness
How these are sampled
PRs merged (all time)
0%
Median days to close, 50 most recently updated closed issues
not measured
Median days to close, 50 most recently updated closed PRs
42

Stars over time

2024-04-17 · 112026-07-07 · 12
PracticesBeta

1 development-tooling and community-health practice detected across 1 family in the upstream repository

Checks run against github.com/mthrun/databionicswarm on 2026-10-18.

Lint, format, editor (1)
RStudio project
How this is detected·Detection ruleset v3 (2026-09-26)

Dependencies

Declared dependencies
22 external dependencies (excludes base and recommended)

Installing DatabionicSwarm adds 24 packages (12 with compiled code, 18 MB of source tarballs). Heaviest: ggplot2 6.0 MB, Rcpp 1.8 MB, isoband 1.5 MB.

Depends (1)
R >= 3.0
Enhances (0)
none
Reverse dependencies
2direct
0indirect
Imports 2
Suggested by 2
Depends, Imports or LinkingTo, most downloaded first
Suggests, most downloaded first

Datasets

People & History

People (2)
Author, Maintainer since 0.9.7 (2017), Copyright holder
Author, Reviewer · added in 1.2.0
Releases (14)

Pick two releases to compare their code metrics.

  • R
    R 4.6.0 released · 2026-04-24
  • R
    R 4.5.0 released · 2025-04-11
  • 2.0.0Latest
    record
    2024-06-20 · current release · diff ↗ ·
    added 2 exports
    RobustNorm_BackTrafo, RobustNormalization
  • R
    R 4.4.0 released · 2024-04-24
  • 1.2.1
    record
    2023-10-13 · diff ↗ ·
    removed 4 exports
    ClusteringAccuracy, DelaunayClassificationError, RobustNormalization, RobustNorm_BackTrafo
  • 1.2.0
    record
    2023-05-30 · diff ↗
  • R
    R 4.3.0 released · 2023-04-21
  • 1.1.6
    record
    2022-11-29 · diff ↗ ·
    added 1 export
    UniquePoints
  • R
    R 4.2.0 released · 2022-04-22
  • R
    R 4.1.0 released · 2021-05-18
  • 1.1.5
    record
    2021-01-12 · diff ↗
  • R
    R 4.0.0 released · 2020-04-24
  • 1.1.3
    record
    2020-02-03 · diff ↗
  • 1.1.2
    record
    2019-12-11 · diff ↗ ·
    added 1 export
    RobustNorm_BackTrafo
  • R
    R 3.6.0 released · 2019-04-26
  • 1.1.1
    record
    2019-01-27 · diff ↗
Show 8 earlier eventsHide 8 earlier events
  • 1.1.0
    record
    2018-07-03 · diff ↗ ·
    added 3 exports
    ClusteringAccuracy, DelaunayClassificationError, RelativeDifference
  • 1.0.3
    record
    2018-05-06 · diff ↗
  • R
    R 3.5.0 released · 2018-04-23
  • 1.0.1
    record
    2018-03-07 · diff ↗
  • 1.0.0
    record
    2018-01-31 · diff ↗ ·
    added 1 export
    RobustNormalization
  • 0.9.8
    record
    2017-09-28 · diff ↗ ·
    added 1 export
    DijkstraSSSP
  • 0.9.7
    record
    2017-08-20
  • R
    R 3.4.0 released · 2017-04-21

Package metadata

First published
2017-08-20
Total releases
14 / 9 yrs
License
GPL-3 OSI
Minimum R
≥ 3.0
Bundled data
18 KB / 3 files
Download size
1.0 MB

Cite

Cite this package

Run in R for the authors' entry:

citation("DatabionicSwarm")

The package provides a citation file, so citation() returns the authors' own entry.

It points to 10.1007/978-3-658-20540-9.

Cite the R Observatory

For a number measured here: a download total, a coverage figure, an archival date.

APA

Balamuta, J. J. (2026). R Observatory: Metrics for DatabionicSwarm version 2.0.0 [Data set]. HJJB, LLC. Data release v2026-10-21. https://doi.org/10.5281/zenodo.21843040

From data release v2026-10-21, which the citation names so these numbers can be found later. More on citing and the projects behind them.

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