R Observatory: Metrics for DClusterm version 1.0-2

Balamuta, James Joseph

doi:10.5281/zenodo.21843040

DClusterm

1.0-2Package record

Model-Based Detection of Disease Clusters

0packages depend

7.7Kdownloads / year

–test coverage

13/13flavors OK

Overview

About

Maintained by Virgilio Gomez-RubioCRAN page ↗

Model-based methods for the detection of disease clusters using GLMs, GLMMs and zero-inflated models. These methods are described in 'V. Gómez-Rubio et al.' (2019) doi:10.18637/jss.v090.i14 and 'V. Gómez-Rubio et al.' (2018) doi:10.1007/978-3-030-01584-8_1.

Install

R (CRAN)Ubuntu (r2u)Fedora (COPR)openSUSE (OBS)

install.packages("DClusterm", repos = "https://cloud.r-project.org/")

Installs the current CRAN release. Prebuilt binaries on Windows and macOS.

Release

# enable cranapt (r2u) if it is not already set up, then install
grep -rqs r2u.stat.illinois.edu /etc/apt/sources.list /etc/apt/sources.list.d/ \
  || curl -fsSL https://raw.githubusercontent.com/eddelbuettel/r2u/master/inst/scripts/add_cranapt_noble.sh | sudo bash
sudo apt install -y r-cran-dclusterm

Fast Ubuntu binaries via r2u (no compilation). The cranapt setup runs once and is skipped when it is already enabled. We list this channel from recorded r2u download activity rather than from a live index of the repository, so treat it as last known rather than guaranteed.

bspm (used by r2u) also needs make: sudo apt install make

# enable the iucar/cran COPR if it is not already present, then install
ls /etc/yum.repos.d/*iucar*cran*.repo >/dev/null 2>&1 \
  || sudo dnf copr enable -y iucar/cran
sudo dnf install -y R-CRAN-DClusterm

RPMs from the iucar/cran COPR, rebuilt from CRAN.

For install.packages() integration in R, also: sudo dnf install R-CoprManager

# add the autoCRAN OBS repo (Tumbleweed) if it is missing, then install
zypper -q lr | grep -qi autoCRAN \
  || sudo zypper addrepo https://download.opensuse.org/repositories/devel:/languages:/R:/autoCRAN/openSUSE_Tumbleweed/devel:languages:R:autoCRAN.repo
sudo zypper install -y R-DClusterm

RPMs auto-built from CRAN on openSUSE OBS (Tumbleweed). We list this channel from recorded autoCRAN download activity rather than from a live index of the repository, so treat it as last known rather than guaranteed.

Health

CRAN checks

13OK

CRAN check page ↗

Slowest check: 5.8 min · r-release-macos-x86_64

Status changes

OK13 OK2026-08-05
NOTE12 OK, 1 NOTE2026-08-01
OK13 OK2026-07-23
ERROR12 OK, 1 ERROR2026-07-09
OK12 OK2026-04-25

Show 1 earlier changeHide 1 earlier change

NOTE12 OK, 2 NOTE2026-03-10

Advisories

none known

How this is measured·How advisories are found

Documentation

In release 1.0-2

READMENoVignettesYes · 1 · dynamicNEWSNoCitation fileYes · cites a publicationWebsitenot declared in DESCRIPTION

Cites a JSS article

Help pages: 16
Examples that run: 100%6 run in a plain check
Exported functions with examples: 75%
Documented parameters: 100%
Return-value docs: 100%
Help pages citing references: 13%

Vignettes (1)

Model-based detection of disease clusters PDF

How these are measured

Downloads

7.7K

CRAN downloads in the past year

Rank #5,710 · ~21/day · ~639/mo

Releases R versions

Daily download trend is not available in this view yet.

58730 days

1.4K90 days

7.7K1 year

Compare downloads with other packages →

Also on179 r2u13 autocran118 c2d4u

How downloads are counted

Dependencies

Declared dependencies

10 external dependencies (excludes base and recommended)

Installing DClusterm adds 25 packages (20 with compiled code, 43 MB of source tarballs). Heaviest: sf 9.3 MB, spdep 4.5 MB, sp 4.3 MB.

Depends (5)

R >= 3.5.0parallelsp spacetime DCluster

Imports (3)

methodsxts lme4

LinkingTo (0)

none

Suggests (5)

INLA pscl RColorBrewer gridExtra latticeExtra

Enhances (0)

none

Dependency license breakdown →

Reverse dependencies

0direct

0indirect

Nothing depends on this yet.

How these are counted

Code & Tests

Datasets

People & History

People (3)

Virgilio Gomez-Rubio

Author, Maintainer since 0.1 (2017)

Barry Rowlingson

Author

Paula Esther Moraga Serrano

Author

Listed in earlier versions (1)

Serrano

no longer listed · 1.0-2

Releases (6)

Pick two releases to compare their code metrics.

R
R 4.6.0 released · 2026-04-24
1.0-2Latest
record
2025-05-08 · current release · diff ↗
R
R 4.5.0 released · 2025-04-11
R
R 4.4.0 released · 2024-04-24
R
R 4.3.0 released · 2023-04-21
R
R 4.2.0 released · 2022-04-22
R
R 4.1.0 released · 2021-05-18
R
R 4.0.0 released · 2020-04-24
1.0-1
record
2020-02-25 · diff ↗
1.0-0
record
2019-08-21 · diff ↗
R
R 3.6.0 released · 2019-04-26
unarchivedReturned to CRAN
2018-05-28
archivedRemoved from CRAN
2018-05-28
check problems were not corrected despite reminders
0.2-1
record
2018-05-28 · diff ↗
R
R 3.5.0 released · 2018-04-23
0.2
record
2018-02-20 · diff ↗ ·
removed 1 export
pattern:.

added 8 exports
DetectClustersModel, SelectStatsAllClustersNoOverlap, computeprob, get.allknclusters, get.stclusters, knbinary, mergeknclusters, slimknclusters

Show 3 earlier eventsHide 3 earlier events

R
R 3.4.0 released · 2017-04-21
0.1
record
2017-02-12
R
R 3.3.0 released · 2016-05-03

Package metadata

First published: 2017-02-12
Total releases: 6 / 9 yrs
License: GPL-3 OSI
Additional repositories: inla.r-inla-download.org
Minimum R: ≥ 3.5.0
Bundled data: 857 KB / 5 files
Download size: 3.1 MB

Appears in task views

Analysis of Spatial Data

Cite

Cite this package

Run in R for the authors' entry:

citation("DClusterm")

The package provides a citation file, so citation() returns the authors' own entry.

It points to 10.18637/jss.v090.i14, 10.1007/978-3-030-01584-8_1.

Cite the R Observatory

For a number measured here: a download total, a coverage figure, an archival date.

Format

APA

Balamuta, J. J. (2026). R Observatory: Metrics for DClusterm version 1.0-2 [Data set]. HJJB, LLC. Data release v2026-10-18. https://doi.org/10.5281/zenodo.21843040

From data release v2026-10-18, which the citation names so these numbers can be found later. More on citing and the projects behind them.

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