R Observatory: Metrics for CorMID version 0.3.1

Balamuta, James Joseph

doi:10.5281/zenodo.21843040

CorMID

0.3.1Package record

Correct Mass Isotopologue Distribution Vectors

0packages dependsuggested by 1

3.2Kdownloads / year

83.7%test coverage

13/13flavors OK

Overview

About

Maintained by Jan LisecCRAN page ↗GitHub ↗

In metabolic flux experiments tracer molecules (often glucose containing labelled carbon) are incorporated in compounds measured using mass spectrometry. The mass isotopologue distributions of these compounds needs to be corrected for natural abundance of labelled carbon and other effects, which are specific on the compound and ionization technique applied. This package provides functions to correct such effects in gas chromatography atmospheric pressure chemical ionization mass spectrometry analyses.

Install

R (CRAN)pak (dev)Ubuntu (r2u)Fedora (COPR)openSUSE (OBS)

install.packages("CorMID", repos = "https://cloud.r-project.org/")

Installs the current CRAN release. Prebuilt binaries on Windows and macOS.

if (!requireNamespace("pak", quietly = TRUE))
  install.packages("pak", repos = "https://cloud.r-project.org/")
pak::pak("janlisec/CorMID")

Development version from janlisec/CorMID. Installs pak first if it is not already available.

Release

# enable cranapt (r2u) if it is not already set up, then install
grep -rqs r2u.stat.illinois.edu /etc/apt/sources.list /etc/apt/sources.list.d/ \
  || curl -fsSL https://raw.githubusercontent.com/eddelbuettel/r2u/master/inst/scripts/add_cranapt_noble.sh | sudo bash
sudo apt install -y r-cran-cormid

Fast Ubuntu binaries via r2u (no compilation). The cranapt setup runs once and is skipped when it is already enabled. We list this channel from recorded r2u download activity rather than from a live index of the repository, so treat it as last known rather than guaranteed.

bspm (used by r2u) also needs make: sudo apt install make

# enable the iucar/cran COPR if it is not already present, then install
ls /etc/yum.repos.d/*iucar*cran*.repo >/dev/null 2>&1 \
  || sudo dnf copr enable -y iucar/cran
sudo dnf install -y R-CRAN-CorMID

RPMs from the iucar/cran COPR, rebuilt from CRAN.

For install.packages() integration in R, also: sudo dnf install R-CoprManager

# add the autoCRAN OBS repo (Tumbleweed) if it is missing, then install
zypper -q lr | grep -qi autoCRAN \
  || sudo zypper addrepo https://download.opensuse.org/repositories/devel:/languages:/R:/autoCRAN/openSUSE_Tumbleweed/devel:languages:R:autoCRAN.repo
sudo zypper install -y R-CorMID

RPMs auto-built from CRAN on openSUSE OBS (Tumbleweed). We list this channel from recorded autoCRAN download activity rather than from a live index of the repository, so treat it as last known rather than guaranteed.

Health

CRAN checks

13OK

CRAN check page ↗

Slowest check: 2.9 min · r-devel-windows-x86_64

Status changes

OK13 OK2026-08-05
NOTE12 OK, 1 NOTE2026-08-01
OK14 OK2026-04-22
ERROR13 OK, 1 ERROR2026-04-18
OK14 OK2026-03-10

Advisories

none known

How this is measured·How advisories are found

Documentation

In release 0.3.1

READMEYes · 459 wordsVignettesYes · 1 · dynamicNEWSNoCitation fileYes · cites a publicationWebsitenot declared in DESCRIPTION

Help pages: 9
Examples that run: 100%5 run in a plain check
Exported functions with examples: 100%
Documented parameters: 100%
Return-value docs: 100%
Help pages citing references: 11%

Vignettes (1)

CorMID HTML

How these are measured

Downloads

3.2K

CRAN downloads in the past year

Rank #11,763 · ~9/day · ~263/mo

Releases R versions

Daily download trend is not available in this view yet.

33530 days

93090 days

3.2K1 year

Compare downloads with other packages →

Also on349 r2u11 autocran

How downloads are counted

Repository

janlisec/cormid ↗Account: janlisec

0Stars

1Forks

0Open issues

0Open PRs

0Releases

38Commits

2Commit identities

License file reads as GPL-3.0 · 38 commits · Last activity 2025-01-17

Responsiveness

How these are sampled

PRs merged (all time): 100%
Median days to close, 50 most recently updated closed issues: not measured
Median days to close, 50 most recently updated closed PRs: 0

Forks over time

2024-10-15 · 12026-07-07 · 1

How these are measured

PracticesBeta

5 development-tooling and community-health practices detected across 4 families in the upstream repository

Checks run against github.com/janlisec/cormid on 2026-10-21.

Continuous integration (2)

GitHub ActionsR CMD check workflow

The R CMD check workflow runs on Linux, macOS and Windows, and on R-devel

Docs source (1)

README.Rmd

Coverage (1)

Coverage reporting

Reproducibility and dev environment (1)

data-raw/

How this is detected·Detection ruleset v4 (2026-10-20)

Dependencies

Declared dependencies

7 external dependencies (excludes base and recommended)

Installing CorMID adds 1 package (1 with compiled code, 1.8 MB of source tarballs). Heaviest: Rcpp 1.8 MB.

Depends (1)

R >= 3.5.0

Imports (1)

Rcpp

LinkingTo (1)

Rcpp

Suggests (5)

knitr Rdisop rmarkdown testthat vdiffr

Enhances (0)

none

Dependency license breakdown →

Reverse dependencies

0direct

0indirect

Suggested by 1

Suggests, most downloaded first

HiResTEC

How these are counted

Code & Tests

Datasets

People & History

People (1)

Jan Lisec

Author, Maintainer since 0.1.4 (2022)

Releases (6)

Pick two releases to compare their code metrics.

R
R 4.6.0 released · 2026-04-24
R
R 4.5.0 released · 2025-04-11
0.3.1Latest
record
2025-01-09 · current release · diff ↗
0.2.1
record
2024-10-02 · diff ↗ ·
added 1 export
getMID
R
R 4.4.0 released · 2024-04-24
0.1.9
record
2023-08-10 · diff ↗
R
R 4.3.0 released · 2023-04-21
0.1.7
record
2022-12-01 · diff ↗
0.1.6
record
2022-05-03 · diff ↗
R
R 4.2.0 released · 2022-04-22
0.1.4
record
2022-03-30
R
R 4.1.0 released · 2021-05-18

Package metadata

First published: 2022-03-30
Total releases: 6 / 4 yrs
License: GPL (>= 3) OSI
Minimum R: ≥ 3.5.0
Bundled data: 35 KB / 4 files
Download size: 98 KB

Cite

Cite this package

Run in R for the authors' entry:

citation("CorMID")

The package provides a citation file, so citation() returns the authors' own entry.

It points to 10.3390/metabo12050408.

Cite the R Observatory

For a number measured here: a download total, a coverage figure, an archival date.

Format

APA

Balamuta, J. J. (2026). R Observatory: Metrics for CorMID version 0.3.1 [Data set]. HJJB, LLC. Data release v2026-10-25. https://doi.org/10.5281/zenodo.21843040

From data release v2026-10-25, which the citation names so these numbers can be found later. More on citing and the projects behind them.

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