R Observatory: Metrics for ClusROC version 1.0.3

Balamuta, James Joseph

doi:10.5281/zenodo.21843040

ClusROC

1.0.3

ROC Analysis in Three-Class Classification Problems for Clustered Data

0packages depend

3.6Kdownloads / year

62.1%test coverage

13/13flavors OK

Overview

About

Maintained by Duc-Khanh ToCRAN page ↗GitHub ↗Issues ↗

Statistical methods for ROC surface analysis in three-class classification problems for clustered data and in presence of covariates. In particular, the package allows to obtain covariate-specific point and interval estimation for: (i) true class fractions (TCFs) at fixed pairs of thresholds; (ii) the ROC surface; (iii) the volume under ROC surface (VUS); (iv) the optimal pairs of thresholds. Methods considered in points (i), (ii) and (iv) are proposed and discussed in To et al. (2022) doi:10.1177/09622802221089029. Referring to point (iv), three different selection criteria are implemented: Generalized Youden Index (GYI), Closest to Perfection (CtP) and Maximum Volume (MV). Methods considered in point (iii) are proposed and discussed in Xiong et al. (2018) doi:10.1177/0962280217742539. Visualization tools are also provided. We refer readers to the articles cited above for all details.

Install

R (CRAN)pak (dev)Ubuntu (r2u)Fedora (COPR)openSUSE (OBS)

install.packages("ClusROC", repos = "https://cloud.r-project.org/")

Installs the current CRAN release. Prebuilt binaries on Windows and macOS.

if (!requireNamespace("pak", quietly = TRUE))
  install.packages("pak", repos = "https://cloud.r-project.org/")
pak::pak("toduckhanh/ClusROC")

Development version from toduckhanh/ClusROC. Installs pak first if it is not already available.

Release

# enable cranapt (r2u) if it is not already set up, then install
grep -rqs r2u.stat.illinois.edu /etc/apt/sources.list /etc/apt/sources.list.d/ \
  || curl -fsSL https://raw.githubusercontent.com/eddelbuettel/r2u/master/inst/scripts/add_cranapt_noble.sh | sudo bash
sudo apt install -y r-cran-clusroc

Fast Ubuntu binaries via r2u (no compilation). The cranapt setup runs once and is skipped when it is already enabled. We list this channel from recorded r2u download activity rather than from a live index of the repository, so treat it as last known rather than guaranteed.

bspm (used by r2u) also needs make: sudo apt install make

# enable the iucar/cran COPR if it is not already present, then install
ls /etc/yum.repos.d/*iucar*cran*.repo >/dev/null 2>&1 \
  || sudo dnf copr enable -y iucar/cran
sudo dnf install -y R-CRAN-ClusROC

RPMs from the iucar/cran COPR, rebuilt from CRAN.

For install.packages() integration in R, also: sudo dnf install R-CoprManager

# add the autoCRAN OBS repo (Tumbleweed) if it is missing, then install
zypper -q lr | grep -qi autoCRAN \
  || sudo zypper addrepo https://download.opensuse.org/repositories/devel:/languages:/R:/autoCRAN/openSUSE_Tumbleweed/devel:languages:R:autoCRAN.repo
sudo zypper install -y R-ClusROC

RPMs auto-built from CRAN on openSUSE OBS (Tumbleweed). We list this channel from recorded autoCRAN download activity rather than from a live index of the repository, so treat it as last known rather than guaranteed.

Health

CRAN checks

13OK

CRAN check page ↗

Slowest check: 7.7 min · r-oldrel-windows-x86_64

Status changes

OK13 OK2026-08-05
NOTE12 OK, 1 NOTE2026-08-01
OK13 OK2026-06-09
ERROR12 OK, 1 ERROR2026-06-08
OK14 OK2026-04-22

Show 2 earlier changesHide 2 earlier changes

ERROR13 OK, 1 ERROR2026-04-18
OK14 OK2026-03-10

Advisories

none known

How this is measured·How advisories are found

Documentation

In release 1.0.3

READMEYes · 191 wordsVignettesNoNEWSYes · 100% structured · does not mention 1.0.3Citation fileNoWebsitenot declared in DESCRIPTION

Help pages: 18includes a package overview page
Examples that run: 80%4 run in a plain check · 1 only when donttest examples are enabled (R CMD check --as-cran)
Exported functions with examples: 83%
Documented parameters: 97%
Return-value docs: 100%
Help pages citing references: 44%

How these are measured

Downloads

3.6K

CRAN downloads in the past year

Rank #6,470 · ~10/day · ~303/mo

Releases R versions

Daily download trend is not available in this view yet.

69830 days

1.3K90 days

3.6K1 year

Compare downloads with other packages →

Also on415 r2u6 autocran

How downloads are counted

Repository

toduckhanh/clusroc ↗Account: toduckhanh

0Stars

0Forks

0Open issues

0Open PRs

2Releases

238Commits

1Commit identities

biomakerbox-cox-transformationmixed-effects-modelsoptimal-thresholdrreciver-operating-characteristics

License file reads as GPL-3.0 · 238 commits · Last activity 2022-11-17 · The default branch showed an older version (1.0.2) than CRAN on 2026-10-11

Responsiveness

How these are sampled

PRs merged (all time): 100%
Median days to close, 50 most recently updated closed issues: not measured
Median days to close, 50 most recently updated closed PRs: 0

Releases over time

2022-05-23 · 22026-07-07 · 2

How these are measured

PracticesBeta

1 development-tooling and community-health practice detected across 1 family in the upstream repository

Checks run against github.com/toduckhanh/clusroc on 2026-10-11.

Lint, format, editor (1)

RStudio project

How this is detected·Detection ruleset v3 (2026-09-26)

Dependencies

Declared dependencies

12 external dependencies (excludes base and recommended)

Installing ClusROC adds 95 packages (46 with compiled code, 86 MB of source tarballs). Heaviest: stringi 11 MB, ggplot2 6.0 MB, bslib 5.6 MB.

Depends (6)

R >= 3.5.0statsutilsgraphicsnlmeRcpp

Imports (9)

rgl ellipse numDeriv ggplot2 ggpubr foreach iteratorsparalleldoParallel

LinkingTo (2)

Rcpp RcppArmadillo

Suggests (1)

testthat

Enhances (0)

none

Dependency license breakdown →

Reverse dependencies

0direct

0indirect

Nothing depends on this yet.

How these are counted

Code & Tests

Datasets

People & History

People (3)

Duc-Khanh To

Author, Maintainer since 1.0.1 (2022)

Gianfranco Adimari

Contributor · added in 1.0.3

Monica Chiogna

Contributor

Listed in earlier versions (1)

with contributions from Gianfranco Adimari

no longer listed · 1.0.1 to 1.0.2

Releases (3)

Pick two releases to compare their code metrics.

R
R 4.6.0 released · 2026-04-24
1.0.3Latest
record
2025-10-01 · current release · diff ↗
R
R 4.5.0 released · 2025-04-11
R
R 4.4.0 released · 2024-04-24
R
R 4.3.0 released · 2023-04-21
1.0.2
record
2022-11-17 · diff ↗ ·
removed 6 exports
ROCsurface, TCFs, VUS, ci_VUS, lme2, optThres3

added 6 exports
ci_clus_vus, clus_lme, clus_opt_thres3, clus_roc_surface, clus_tcfs, clus_vus
1.0.1
record
2022-05-25
R
R 4.2.0 released · 2022-04-22

Package metadata

First published: 2022-05-25
Total releases: 3 / 4 yrs
License: GPL-3 OSI
Minimum R: ≥ 3.5.0
Bundled data: 59 KB / 4 files
Download size: 116 KB

Cite

Cite this package

Run in R for the authors' preferred citation:

citation("ClusROC")

Format

To, D., Adimari, G., & Chiogna, M. (2025). ClusROC: ROC Analysis in Three-Class Classification Problems for Clustered Data (Version 1.0.3) [Computer software]. https://doi.org/10.32614/CRAN.package.ClusROC

This package has no citation file, so citation() returns this entry built from DESCRIPTION.

Cite the R Observatory

For a number measured here: a download total, a coverage figure, an archival date.

Format

APA

Balamuta, J. J. (2026). R Observatory: Metrics for ClusROC version 1.0.3 [Data set]. HJJB, LLC. Data release v2026-10-17. https://doi.org/10.5281/zenodo.21843040

From data release v2026-10-17, which the citation names so these numbers can be found later. More on citing and the projects behind them.

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