R Observatory: Metrics for CGNM version 0.10.0

Balamuta, James Joseph

doi:10.5281/zenodo.21843040

CGNM

0.10.0Package record

Cluster Gauss-Newton Method

0packages depend

7.6Kdownloads / year

43.3%test coverage

13/13flavors OK

Overview

About

Maintained by Yasunori AokiCRAN page ↗

Find multiple solutions of a nonlinear least squares problem. Cluster Gauss-Newton method does not assume uniqueness of the solution of the nonlinear least squares problem and compute multiple minimizers. Please cite the following paper when this software is used in your research: Aoki et al. (2020) doi:10.1007/s11081-020-09571-2. Cluster Gauss–Newton method. Optimization and Engineering, 1-31. Please cite the following paper when profile likelihood plot is drawn with this software and used in your research: Aoki and Sugiyama (2024) doi:10.1002/psp4.13055. Cluster Gauss-Newton method for a quick approximation of profile likelihood: With application to physiologically-based pharmacokinetic models. CPT Pharmacometrics Syst Pharmacol.13(1):54-67. GPT based helper bot available at https://chatgpt.com/g/g-684936db9e748191a2796debb00cd755-cluster-gauss-newton-method-helper-bot .

Install

R (CRAN)Ubuntu (r2u)Fedora (COPR)openSUSE (OBS)

install.packages("CGNM", repos = "https://cloud.r-project.org/")

Installs the current CRAN release. Prebuilt binaries on Windows and macOS.

Release

# enable cranapt (r2u) if it is not already set up, then install
grep -rqs r2u.stat.illinois.edu /etc/apt/sources.list /etc/apt/sources.list.d/ \
  || curl -fsSL https://raw.githubusercontent.com/eddelbuettel/r2u/master/inst/scripts/add_cranapt_noble.sh | sudo bash
sudo apt install -y r-cran-cgnm

Fast Ubuntu binaries via r2u (no compilation). The cranapt setup runs once and is skipped when it is already enabled. We list this channel from recorded r2u download activity rather than from a live index of the repository, so treat it as last known rather than guaranteed.

bspm (used by r2u) also needs make: sudo apt install make

# enable the iucar/cran COPR if it is not already present, then install
ls /etc/yum.repos.d/*iucar*cran*.repo >/dev/null 2>&1 \
  || sudo dnf copr enable -y iucar/cran
sudo dnf install -y R-CRAN-CGNM

RPMs from the iucar/cran COPR, rebuilt from CRAN.

For install.packages() integration in R, also: sudo dnf install R-CoprManager

# add the autoCRAN OBS repo (Tumbleweed) if it is missing, then install
zypper -q lr | grep -qi autoCRAN \
  || sudo zypper addrepo https://download.opensuse.org/repositories/devel:/languages:/R:/autoCRAN/openSUSE_Tumbleweed/devel:languages:R:autoCRAN.repo
sudo zypper install -y R-CGNM

RPMs auto-built from CRAN on openSUSE OBS (Tumbleweed). We list this channel from recorded autoCRAN download activity rather than from a live index of the repository, so treat it as last known rather than guaranteed.

Health

CRAN checks

13OK

CRAN check page ↗

Slowest check: 8.6 min · r-oldrel-windows-x86_64

Status changes

OK13 OK2026-08-05
NOTE12 OK, 1 NOTE2026-08-01
OK14 OK2026-03-10

Advisories

none known

How this is measured·How advisories are found

Documentation

In release 0.10.0

READMEYes · 418 wordsVignettesYes · 1 · dynamicNEWSNoCitation fileNoWebsitenot declared in DESCRIPTION

Help pages: 36 (1 internal)includes a package overview page
Examples that run: 68%23 run in a plain check · 11 never run
Exported functions with examples: 100%
Documented parameters: 100%
Return-value docs: 100%
Help pages citing references: 3%

Vignettes (1)

CGNM: Cluster Gauss-Newton Method HTML

How these are measured

Downloads

7.6K

CRAN downloads in the past year

Rank #5,407 · ~21/day · ~634/mo

Releases R versions

Daily download trend is not available in this view yet.

58130 days

1.5K90 days

7.6K1 year

Compare downloads with other packages →

Also on131 r2u12 autocran

How downloads are counted

Dependencies

Declared dependencies

6 external dependencies (excludes base and recommended)

Installing CGNM adds 41 packages (23 with compiled code, 37 MB of source tarballs). Heaviest: ggplot2 6.0 MB, bslib 5.6 MB, promises 3.1 MB.

Depends (1)

R >= 3.5.0

Imports (5)

statsggplot2MASSshinymethods

LinkingTo (0)

none

Suggests (4)

knitr rmarkdown testthat rxode2

Enhances (0)

none

Dependency license breakdown →

Reverse dependencies

0direct

0indirect

Nothing depends on this yet.

How these are counted

Code & Tests

People & History

People (1)

Yasunori Aoki

Author, Maintainer since 0.1.0 (2022)

Releases (15)

Pick two releases to compare their code metrics.

0.10.0Latest
record
2026-09-13 · current release · diff ↗ ·
added 5 exports
as_CGNM_result_S4, generateCGNM_script, make_ShinyCGNM_initialCondition, make_ShinyCGNM_parameterInfo, make_ShinyCGNM_simulationTimepoints
R
R 4.6.0 released · 2026-04-24
0.9.3
record
2026-01-08 · diff ↗
0.9.2
record
2025-09-11 · diff ↗ ·
added 1 export
compare_profileLikelihood
R
R 4.5.0 released · 2025-04-11
0.9.1
record
2025-01-28 · diff ↗ ·
added 3 exports
Cluster_Gauss_Newton_EBE_method, make_ShinyCGNM_doseData, make_ShinyCGNM_observationData
0.9.0
record
2024-06-12 · diff ↗
R
R 4.4.0 released · 2024-04-24
0.8.0
record
2024-04-12 · diff ↗ ·
added 2 exports
col_quantile, shinyCGNM
0.6.7
record
2024-01-18 · diff ↗
0.6.5
record
2023-05-19 · diff ↗ ·
added 4 exports
plot_simulationMatrixWithCI, plot_simulationWithCI, suggestInitialLowerRange, suggestInitialUpperRange
R
R 4.3.0 released · 2023-04-21
0.6.2
record
2023-01-10 · diff ↗ ·
added 1 export
table_profileLikelihoodConfidenceInterval
unarchivedReturned to CRAN
2022-11-01
0.5.1
record
2022-11-01 · diff ↗ ·
added 1 export
plot_2DprofileLikelihood
archivedRemoved from CRAN
2022-10-24
issues were not corrected in time

Show 7 earlier eventsHide 7 earlier events

0.4.0
record
2022-07-14 · diff ↗ ·
added 2 exports
plot_SSRsurface, plot_profileLikelihood
0.3.2
record
2022-06-04 · diff ↗ ·
removed 2 exports
acceptedIndecies, acceptedIndecies_binary

added 6 exports
acceptedIndices, acceptedIndices_binary, plot_goodnessOfFit, plot_paraDistribution_byHistogram, table_parameterSummary, topIndices
R
R 4.2.0 released · 2022-04-22
0.3.1
record
2022-03-14 · diff ↗ ·
added 4 exports
Cluster_Gauss_Newton_Bootstrap_method, bestApproximateMinimizers, plot_SSR_parameterValue, plot_parameterValue_scatterPlots
0.1.1
record
2022-01-10 · diff ↗
0.1.0
record
2022-01-06
R
R 4.1.0 released · 2021-05-18

Package metadata

First published: 2022-01-06
Total releases: 15 / 4 yrs
License: MIT + file LICENSE OSI
Minimum R: ≥ 3.5.0
Download size: 374 KB

Appears in task views

Optimization and Mathematical Programming

Cite

Cite this package

Run in R for the authors' preferred citation:

citation("CGNM")

Format

Aoki, Y. (2026). CGNM: Cluster Gauss-Newton Method (Version 0.10.0) [Computer software]. https://doi.org/10.32614/CRAN.package.CGNM

This package has no citation file, so citation() returns this entry built from DESCRIPTION.

Cite the R Observatory

For a number measured here: a download total, a coverage figure, an archival date.

Format

APA

Balamuta, J. J. (2026). R Observatory: Metrics for CGNM version 0.10.0 [Data set]. HJJB, LLC. Data release v2026-10-23. https://doi.org/10.5281/zenodo.21843040

From data release v2026-10-23, which the citation names so these numbers can be found later. More on citing and the projects behind them.

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