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CEDA

CRISPR Screen and Gene Expression Differential Analysis

v1.1.1 · Feb 26, 2024 · Apache License (== 2.0)

Description

Provides analytical methods for analyzing CRISPR screen data at different levels of gene expression. Multi-component normal mixture models and EM algorithms are used for modeling.

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CRAN Check Status

1 ERROR
13 OK
Show all 14 flavors
Flavor Status
r-devel-linux-x86_64-debian-clang OK
r-devel-linux-x86_64-debian-gcc OK
r-devel-linux-x86_64-fedora-clang OK
r-devel-linux-x86_64-fedora-gcc OK
r-devel-macos-arm64 OK
r-devel-windows-x86_64 OK
r-oldrel-macos-arm64 OK
r-oldrel-macos-x86_64 OK
r-oldrel-windows-x86_64 ERROR
r-patched-linux-x86_64 OK
r-release-linux-x86_64 OK
r-release-macos-arm64 OK
r-release-macos-x86_64 OK
r-release-windows-x86_64 OK
Check details (1 non-OK)
ERROR r-oldrel-windows-x86_64

re-building of vignette outputs

Error(s) in re-building vignettes:
--- re-building 'Userguide.Rmd' using rmarkdown
! Unable to load picture or PDF file '14bfcf4bf072ec58767209cab97f43b8c5fff7b1.
pdf'.
<to be read again> 
                   }
l.391 ...cf4bf072ec58767209cab97f43b8c5fff7b1.pdf}

Error: processing vignette 'Userguide.Rmd' failed with diagnostics:
LaTeX failed to compile D:/RCompile/CRANpkg/local/4.4/CEDA.Rcheck/vign_test/CEDA/vignettes/Userguide.tex. See https://yihui.org/tinytex/r/#debugging for debugging tips. See Userguide.log for more info.
--- failed re-building 'Userguide.Rmd'

SUMMARY: processing the following file failed:
  'Userguide.Rmd'

Error: Vignette re-building failed.
Execution halted

Check History

ERROR 13 OK · 0 NOTE · 0 WARNING · 1 ERROR · 0 FAILURE Mar 30, 2026
ERROR r-oldrel-windows-x86_64

re-building of vignette outputs

Error(s) in re-building vignettes:
--- re-building 'Userguide.Rmd' using rmarkdown
! Unable to load picture or PDF file '14bfcf4bf072ec58767209cab97f43b8c5fff7b1.
pdf'.
<to be read again> 
                   }
l.391 ...cf4bf072ec58767209cab97f43b8c5f
...[truncated]...
https://yihui.org/tinytex/r/#debugging for debugging tips. See Userguide.log for more info.
--- failed re-building 'Userguide.Rmd'

SUMMARY: processing the following file failed:
  'Userguide.Rmd'

Error: Vignette re-building failed.
Execution halted
OK 14 OK · 0 NOTE · 0 WARNING · 0 ERROR · 0 FAILURE Mar 10, 2026

Dependency Network

Dependencies Reverse dependencies limma mixtools ggplot2 dplyr ggsci ggridges ggprism CEDA

Version History

new 1.1.1 Mar 10, 2026
updated 1.1.1 ← 1.1.0 diff Feb 26, 2024
updated 1.1.0 ← 1.0.2 diff Aug 10, 2022
new 1.0.2 Jan 6, 2022