R Observatory: Metrics for CEDA version 1.1.1

Balamuta, James Joseph

doi:10.5281/zenodo.21843040

CEDA

1.1.1

CRISPR Screen and Gene Expression Differential Analysis

0packages depend

3.1Kdownloads / year

–test coverage

13/13checks pass

Overview

About

Maintained by Lianbo YuFirst published 2022-01-073 releasesCRAN page ↗

Provides analytical methods for analyzing CRISPR screen data at different levels of gene expression. Multi-component normal mixture models and EM algorithms are used for modeling.

Install

R (CRAN)Ubuntu (r2u)

install.packages("CEDA", repos = "https://cloud.r-project.org/")

Installs the current CRAN release. Prebuilt binaries on Windows and macOS.

Release

# enable cranapt (r2u) if it is not already set up, then install
grep -rqs r2u.stat.illinois.edu /etc/apt/sources.list /etc/apt/sources.list.d/ \
  || curl -fsSL https://raw.githubusercontent.com/eddelbuettel/r2u/master/inst/scripts/add_cranapt_noble.sh | sudo bash
sudo apt install -y r-cran-ceda

Fast Ubuntu binaries via r2u (no compilation). The cranapt setup runs once and is skipped when it is already enabled.

bspm (used by r2u) also needs make: sudo apt install make

Health

CRAN checks

13OK

Slowest check: 8.0 min · r-oldrel-windows-x86_64

Code health

None

Tests · ratio 0.00

not tracked

Coverage

100%

Documentation · exports

8

Dependencies · direct

Check history

OK2026-08-05
13 OK · 0 NOTE · 0 WARNING · 0 ERROR · 0 FAILURE
NOTE2026-08-01
12 OK · 1 NOTE · 0 WARNING · 0 ERROR · 0 FAILURE
OK2026-06-09
13 OK · 0 NOTE · 0 WARNING · 0 ERROR · 0 FAILURE
ERROR2026-06-08
12 OK · 0 NOTE · 0 WARNING · 1 ERROR · 0 FAILURE
OK2026-04-25
12 OK · 0 NOTE · 0 WARNING · 0 ERROR · 0 FAILURE

Show 2 earlier snapshots

ERROR2026-03-30
13 OK · 0 NOTE · 0 WARNING · 1 ERROR · 0 FAILURE
OK2026-03-10
14 OK · 0 NOTE · 0 WARNING · 0 ERROR · 0 FAILURE

Documentation

READMEYes · 2 wordsVignettesYes · dynamicpkgdown siteNoNEWSNoCode of conductNoContributing guideNo

Examples that run: 100%
Documented parameters: 100%
Return-value docs: 100%
References docs: 0%

Downloads

3.1K

CRAN downloads in the past year

Rank #11,772 · ~8/day · ~258/mo

Releases R versions

Daily download trend is not available in this view yet.

25930 days

84290 days

3.1K1 year

Compare downloads with other packages →

Also on386 r2u

Dependencies

Declared dependencies

9 external dependencies (excludes base and recommended)

Depends (2)

R >= 3.5.0limma

Imports (7)

statsmixtools ggplot2 dplyr ggsci ggridges ggprism

LinkingTo (0)

none

Suggests (2)

knitr rmarkdown

Enhances (0)

none

Dependency license breakdown →

Reverse dependencies

0direct

0indirect

Nothing depends on this yet.

Code & Tests

People & History

People (4)

Maintainer (1)

Lianbo Yu

Author, Maintainer

Authors (4)

Lianbo Yu

Author, Maintainer

Kevin R. Coombes

Author

Lang Li

Author · added in 1.1.0

Yue Zhao

Author · added in 1.1.0

Listed in earlier versions (1)

Kevin R.

no longer listed · 1.0.2 to 1.1.1

Package Timeline

3 releases. Pick two to compare their code metrics. R releases are shown for context.

R
R 4.6.0 released · 2026-04-24
R
R 4.5.0 released · 2025-04-11
R
R 4.4.0 released · 2024-04-24
1.1.1Latest
2024-02-27 · current release · diff ↗
R
R 4.3.0 released · 2023-04-21
1.1.0
2022-08-11 · diff ↗
unarchivedReturned to CRAN
2022-08-11
archivedRemoved from CRAN
2022-06-17
check problems were not corrected in time
R
R 4.2.0 released · 2022-04-22
1.0.2
2022-01-07
R
R 4.1.0 released · 2021-05-18

Package metadata

First published: 2022-01-07
Total releases: 3 / 4 yrs
License: Apache License (== 2.0)
Minimum R: ≥ 3.5.0
Bundled data: 693 KB / 1 file
Download size: 2.9 MB
Installed size: not tracked yet
With dependencies: not tracked yet

Cite

Cite this package

Run in R for the authors' preferred citation:

citation("CEDA")

Format

Yu, L., Coombes, K. R., Li, L., & Zhao, Y. (2024). CEDA: CRISPR Screen and Gene Expression Differential Analysis (Version 1.1.1) [Computer software]. https://doi.org/10.32614/CRAN.package.CEDA

This is what citation() produces when a package has no citation file of its own. If it prints something else, use that.

Cite the R Observatory

For a number measured here: a download total, a coverage figure, an archival date.

Format

APA

Balamuta, J. J. (2026). R Observatory: Metrics for CEDA version 1.1.1 [Data set]. HJJB, LLC. Data release v2026-08-16. https://doi.org/10.5281/zenodo.21843040

From data release v2026-08-16, which the citation names so these numbers can be found later. More on citing and the projects behind them.

Report a problem with this page →