R Observatory: Metrics for BayesVolcano version 1.0.1

Balamuta, James Joseph

doi:10.5281/zenodo.21843040

BayesVolcano

1.0.1

Creating Volcano Plots from Bayesian Model Posteriors

0packages depend

954downloads / year

70.9%test coverage

13/13checks pass

Overview

About

Maintained by Katja DanielzikFirst published 2026-03-311 releasesCRAN page ↗GitHub ↗

Bayesian models are used to estimate effect sizes (e.g., gene expression changes, protein abundance differences, drug response effects) while accounting for uncertainty, small sample sizes, and complex experimental designs. However, Bayesian posteriors of models with many parameters are often difficult to interpret at a glance. One way to quickly identify important biological changes based on frequentist analysis are volcano plots (using fold-changes and p-values). Bayesian volcano plots bring together the explicit treatment of uncertainty in Bayesian models and the familiar visualization of volcano plots.

Install

R (CRAN)pak (dev)Ubuntu (r2u)Fedora (COPR)openSUSE (OBS)

install.packages("BayesVolcano", repos = "https://cloud.r-project.org/")

Installs the current CRAN release. Prebuilt binaries on Windows and macOS.

if (!requireNamespace("pak", quietly = TRUE))
  install.packages("pak", repos = "https://cloud.r-project.org/")
pak::pak("KatjaDanielzik/BayesVolcano")

Development version from KatjaDanielzik/BayesVolcano. Installs pak first if it is not already available.

Release

# enable cranapt (r2u) if it is not already set up, then install
grep -rqs r2u.stat.illinois.edu /etc/apt/sources.list /etc/apt/sources.list.d/ \
  || curl -fsSL https://raw.githubusercontent.com/eddelbuettel/r2u/master/inst/scripts/add_cranapt_noble.sh | sudo bash
sudo apt install -y r-cran-bayesvolcano

Fast Ubuntu binaries via r2u (no compilation). The cranapt setup runs once and is skipped when it is already enabled.

bspm (used by r2u) also needs make: sudo apt install make

# enable the iucar/cran COPR if it is not already present, then install
ls /etc/yum.repos.d/*iucar*cran*.repo >/dev/null 2>&1 \
  || sudo dnf copr enable -y iucar/cran
sudo dnf install -y R-CRAN-BayesVolcano

RPMs from the iucar/cran COPR, rebuilt from CRAN.

For install.packages() integration in R, also: sudo dnf install R-CoprManager

# add the autoCRAN OBS repo (Tumbleweed) if it is missing, then install
zypper -q lr | grep -qi autoCRAN \
  || sudo zypper addrepo https://download.opensuse.org/repositories/devel:/languages:/R:/autoCRAN/openSUSE_Tumbleweed/devel:languages:R:autoCRAN.repo
sudo zypper install -y R-BayesVolcano

RPMs auto-built from CRAN on openSUSE OBS (Tumbleweed).

Health

CRAN checks

13OK

Slowest check: 2.6 min · r-release-macos-x86_64

Code health

Yes

Tests · ratio 0.61

70.9%

Coverage · measured lines

100%

Documentation · exports

6

Dependencies · direct

Check history

OK2026-08-05
13 OK · 0 NOTE · 0 WARNING · 0 ERROR · 0 FAILURE
NOTE2026-08-01
12 OK · 1 NOTE · 0 WARNING · 0 ERROR · 0 FAILURE
OK2026-04-01
6 OK · 0 NOTE · 0 WARNING · 0 ERROR · 0 FAILURE

Documentation

READMEYes · 403 wordsVignettesYes · dynamicpkgdown siteNoNEWSYes · 100% structuredCode of conductNoContributing guideNo

Examples that run: 100%
Documented parameters: 100%
Return-value docs: 100%
References docs: 0%

Downloads

954

CRAN downloads in the past year

Rank #18,850 · ~3/day · ~80/mo

Releases R versions

Daily download trend is not available in this view yet.

16430 days

58190 days

9541 year

Compare downloads with other packages →

Also on43 r2u26 autocran

Repository

GitHub ↗ katjadanielzik/bayesvolcano

1Stars

0Forks

0Open issues

0Open PRs

1Releases

38Commits

3Contributors

bayesianposteriorvisualizationvolcano-plot

License GPL-3.0 · 38 commits · Last activity 2026-07-07 · 0% stars, 30d

Stars over time

2026-07-07 · 02026-07-15 · 1

Repository practices

Upstream repositoryBeta

3 development-tooling and community-health practices detected across 3 families in the upstream repository

Checks run against github.com/katjadanielzik/bayesvolcano on 2026-08-16.

Continuous integration (1)

GitHub Actions

CRAN release process (1)

cran-comments.md

Research and citation (1)

CITATION.cff

How this is detected·Detection ruleset v1 (2026-07-18)

Dependencies

Declared dependencies

11 external dependencies (excludes base and recommended)

Depends (1)

R >= 4.5

Imports (6)

ggplot2 HDInterval purrr dplyr magrittr tidyr

LinkingTo (0)

none

Suggests (5)

brms rstan knitr rmarkdown testthat

Enhances (0)

none

Dependency license breakdown →

Reverse dependencies

0direct

0indirect

Nothing depends on this yet.

Code & Tests

Datasets

People & History

People (3)

Maintainer (1)

Katja Danielzik

Author, Maintainer, Copyright holder

Authors (3)

Katja Danielzik

Author, Maintainer, Copyright holder

Daniel Hoffmann

Author

Simo Kitanovski

Author, Contributor

Contributors (1)

Simo Kitanovski

Author, Contributor

Copyright holders (1)

Katja Danielzik

Author, Maintainer, Copyright holder

Package Timeline

1 release. R releases are shown for context.

R
R 4.6.0 released · 2026-04-24
1.0.1Latest
2026-03-31 · current release
R
R 4.5.0 released · 2025-04-11

Package metadata

First published: 2026-03-31
Total releases: 1 / 1 yrs
License: GPL (>= 3) OSI
Minimum R: ≥ 4.5
Bundled data: 744 KB / 2 files
Download size: 1.3 MB
Installed size: not tracked yet
With dependencies: not tracked yet

Cite

Cite this package

Run in R for the authors' preferred citation:

citation("BayesVolcano")

The authors publish a CITATION.cff, so they have said how they want this cited. Run citation() and use what it gives you.

Cite the R Observatory

For a number measured here: a download total, a coverage figure, an archival date.

Format

APA

Balamuta, J. J. (2026). R Observatory: Metrics for BayesVolcano version 1.0.1 [Data set]. HJJB, LLC. Data release v2026-08-16. https://doi.org/10.5281/zenodo.21843040

From data release v2026-08-16, which the citation names so these numbers can be found later. More on citing and the projects behind them.

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