R Observatory: Metrics for BDgraph version 2.74

Balamuta, James Joseph

doi:10.5281/zenodo.21843040

BDgraph

2.74Package record

Bayesian Structure Learning in Graphical Models using Birth-Death MCMC

7packages dependsuggested by 3

45.4Kdownloads / year

–test coverage

13/13flavors OK

Overview

About

Maintained by Reza MohammadiCRAN page ↗Website ↗

Advanced statistical tools for Bayesian structure learning in undirected graphical models, accommodating continuous, ordinal, discrete, count, and mixed data. It integrates recent advancements in Bayesian graphical models as presented in the literature, including the works of Mohammadi and Wit (2015) doi:10.1214/14-BA889, Mohammadi et al. (2021) doi:10.1080/01621459.2021.1996377, Dobra and Mohammadi (2018) doi:10.1214/18-AOAS1164, and Mohammadi et al. (2023) doi:10.48550/arXiv.2307.00127.

Install

R (CRAN)Ubuntu (r2u)Fedora (COPR)openSUSE (OBS)

install.packages("BDgraph", repos = "https://cloud.r-project.org/")

Installs the current CRAN release. Prebuilt binaries on Windows and macOS.

Release

# enable cranapt (r2u) if it is not already set up, then install
grep -rqs r2u.stat.illinois.edu /etc/apt/sources.list /etc/apt/sources.list.d/ \
  || curl -fsSL https://raw.githubusercontent.com/eddelbuettel/r2u/master/inst/scripts/add_cranapt_noble.sh | sudo bash
sudo apt install -y r-cran-bdgraph

Fast Ubuntu binaries via r2u (no compilation). The cranapt setup runs once and is skipped when it is already enabled. We list this channel from recorded r2u download activity rather than from a live index of the repository, so treat it as last known rather than guaranteed.

bspm (used by r2u) also needs make: sudo apt install make

# enable the iucar/cran COPR if it is not already present, then install
ls /etc/yum.repos.d/*iucar*cran*.repo >/dev/null 2>&1 \
  || sudo dnf copr enable -y iucar/cran
sudo dnf install -y R-CRAN-BDgraph

RPMs from the iucar/cran COPR, rebuilt from CRAN.

For install.packages() integration in R, also: sudo dnf install R-CoprManager

# add the autoCRAN OBS repo (Tumbleweed) if it is missing, then install
zypper -q lr | grep -qi autoCRAN \
  || sudo zypper addrepo https://download.opensuse.org/repositories/devel:/languages:/R:/autoCRAN/openSUSE_Tumbleweed/devel:languages:R:autoCRAN.repo
sudo zypper install -y R-BDgraph

RPMs auto-built from CRAN on openSUSE OBS (Tumbleweed). We list this channel from recorded autoCRAN download activity rather than from a live index of the repository, so treat it as last known rather than guaranteed.

Health

CRAN checks

13OK

CRAN check page ↗

Slowest check: 4.0 min · r-devel-windows-x86_64

Status changes

OK13 OK2026-08-05
NOTE12 OK, 1 NOTE2026-08-01
OK12 OK2026-04-25
NOTE13 OK, 1 NOTE2026-03-10

Advisories

none known

How this is measured·How advisories are found

Documentation

In release 2.74

READMEYes · 162 wordsVignettesYes · 2 · dynamicNEWSYes · 67% structured · does not mention 2.74Citation fileYes · cites a publicationWebsiteYes

Cites a JSS article

Help pages: 43includes a package overview page
Examples that run: 37%16 run in a plain check · 27 never run
Exported functions with examples: 100%
Documented parameters: 94%
Return-value docs: 73%
Help pages citing references: 93%

Vignettes (2)

How these are measured

Downloads

45.4K

CRAN downloads in the past year

Rank #2,013 · ~124/day · ~3.8K/mo

Releases R versions

Daily download trend is not available in this view yet.

3K30 days

9.1K90 days

45.4K1 year

Compare downloads with other packages →

Also on540 r2u39 autocran6.2K conda_forge159 c2d4u

How downloads are counted

Dependencies

Declared dependencies

9 external dependencies (excludes base and recommended)

Installing BDgraph adds 22 packages (11 with compiled code, 21 MB of source tarballs). Heaviest: ggplot2 6.0 MB, igraph 4.8 MB, Rcpp 1.8 MB.

Depends (1)

R >= 2.10

Imports (3)

igraph ggplot2 pROC

LinkingTo (0)

none

Suggests (6)

ssgraph huge tmvtnorm skimr knitr rmarkdown

Enhances (0)

none

Dependency license breakdown →

Reverse dependencies

7direct

0indirect

Depends 1 · Imports 6

Suggested by 3

Depends, Imports or LinkingTo, most downloaded first

ssgraph easybgm bmixture rgm bayesWatch GWnorm heteromixgm

Suggests, most downloaded first

qgraph bootnet BayesSUR

How these are counted

Code & Tests

Datasets

People & History

People (3)

Reza Mohammadi

Author, Maintainer · added in 2.45

Ernst Wit

Author

Adrian Dobra

Contributor · added in 2.49

Maintainer since 1.0 (2012)

Listed in earlier versions (1)

Abdolreza Mohammadi

no longer listed · 1.0 to 2.44

Releases (80)

Pick two releases to compare their code metrics.

R
R 4.6.0 released · 2026-04-24
2.74Latest
record
2025-08-29 · current release · diff ↗
R
R 4.5.0 released · 2025-04-11
2.73
record
2024-08-23 · diff ↗ ·
added 1 export
mse
R
R 4.4.0 released · 2024-04-24
R
R 4.3.0 released · 2023-04-21
2.72
record
2022-12-25 · diff ↗ ·
added 2 exports
predict.bdgraph, posterior.predict
2.71
record
2022-12-12 · diff ↗ ·
added 1 export
auc
2.70
record
2022-10-13 · diff ↗
2.69
record
2022-09-29 · diff ↗ ·
added 4 exports
get_Ds_tgm_R, get_Ts_R, update_tu_R, update_mu_R
2.68
record
2022-08-08 · diff ↗
2.67
record
2022-05-09 · diff ↗
R
R 4.2.0 released · 2022-04-22
2.66
record
2022-04-14 · diff ↗
2.65
record
2022-03-30 · diff ↗ ·
added 6 exports
bdgraph.dw, bdw.reg, get_bounds_dw, ddweibull_reg, log_post_cond_dw, near_positive_definite
R
R 4.1.0 released · 2021-05-18

Show 79 earlier eventsHide 79 earlier events

2.64
record
2021-05-03 · diff ↗ ·
added 8 exports
sparsity, roc, conf.mat, conf.mat.plot, ddweibull, pdweibull, qdweibull, rdweibull
2.63
record
2020-08-26 · diff ↗
R
R 4.0.0 released · 2020-04-24
2.62
record
2019-12-05 · diff ↗
2.61
record
2019-09-05 · diff ↗ ·
removed 2 exports
bdgraph.ts, rgcwish

added 3 exports
bf, adj2link, link2adj
2.60
record
2019-08-08 · diff ↗ ·
added 2 exports
precision, covariance
2.59
record
2019-05-06 · diff ↗
R
R 3.6.0 released · 2019-04-26
2.58
record
2019-04-15 · diff ↗ ·
added 7 exports
plot.graph, get_graph, get_g_prior, get_g_start, get_K_start, get_S_n_p, get_cores
2.57
record
2019-04-07 · diff ↗
2.56
record
2019-03-20 · diff ↗
2.55
record
2019-02-15 · diff ↗
2.54
record
2019-01-21 · diff ↗
2.53
record
2018-11-14 · diff ↗ ·
removed 1 export
check.os
2.52
record
2018-10-04 · diff ↗ ·
added 1 export
check.os
2.51
record
2018-06-21 · diff ↗
2.50
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2018-05-20 · diff ↗
2.49
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2018-05-11 · diff ↗
2.48
record
2018-05-04 · diff ↗
2.47
record
2018-04-25 · diff ↗ ·
added 1 export
graph.sim
R
R 3.5.0 released · 2018-04-23
2.46
record
2018-04-17 · diff ↗ ·
added 1 export
rmvnorm
2.45
record
2018-03-29 · diff ↗
2.44
record
2018-01-05 · diff ↗ ·
removed 1 export
check.os

added 2 exports
bdgraph.ts, rgcwish
2.43
record
2017-11-18 · diff ↗ ·
added 2 exports
check.os, detect_cores
2.42
record
2017-11-06 · diff ↗ ·
removed 3 exports
bdgraph.ts, rcwish, rgcwish
2.41
record
2017-10-17 · diff ↗
2.40
record
2017-08-14 · diff ↗ ·
added 1 export
transfer
2.39
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2017-06-21 · diff ↗
2.38
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2017-06-21 · diff ↗
2.37
record
2017-05-25 · diff ↗
2.36
record
2017-04-29 · diff ↗
R
R 3.4.0 released · 2017-04-21
2.35
record
2017-04-15 · diff ↗
2.34
record
2017-04-14 · diff ↗ ·
added 1 export
bdgraph.mpl
2.33
record
2017-02-12 · diff ↗
2.32
record
2017-01-09 · diff ↗
2.31
record
2016-12-20 · diff ↗
2.30
record
2016-11-15 · diff ↗
2.29
record
2016-10-11 · diff ↗
2.28
record
2016-10-03 · diff ↗ ·
added 3 exports
bdgraph.ts, rcwish, rgcwish
R
R 3.3.0 released · 2016-05-03
2.27
record
2016-04-22 · diff ↗
2.26
record
2015-12-21 · diff ↗
2.25
record
2015-11-19 · diff ↗
2.24
record
2015-11-18 · diff ↗ ·
removed 3 exports
phat, prob, log_Ig

added 3 exports
plinks, pgraph, gnorm
2.23
record
2015-10-01 · diff ↗ ·
removed 1 export
I.g

added 1 export
log_Ig
2.22
record
2015-08-31 · diff ↗
2.21
record
2015-08-23 · diff ↗
2.20
record
2015-08-21 · diff ↗ ·
removed 2 exports
print.simulate, plot.simulate

added 2 exports
print.sim, plot.sim
2.19
record
2015-06-16 · diff ↗ ·
added 1 export
I.g
2.18
record
2015-04-19 · diff ↗
R
R 3.2.0 released · 2015-04-16
2.17
record
2015-03-10 · diff ↗ ·
removed 1 export
I.g
2.16
record
2015-02-28 · diff ↗
R
R 3.1.0 released · 2014-04-10
R
R 3.0.0 released · 2013-04-03
2.15.3
record
2013-02-04 · diff ↗ ·
removed 1 export
pattern:^[[:alpha:]]+

added 14 exports
bdgraph, phat, select, prob, bdgraph.sim, I.g, compare, plotcoda, traceplot, print.bdgraph, plot.bdgraph, summary.bdgraph, print.simulate, plot.simulate
2.15.2
record
2012-10-08 · diff ↗
2.15
record
2015-01-23 · diff ↗
2.14
record
2014-12-19 · diff ↗ ·
added 4 exports
bdgraph.npn, plotroc, rgwish, rwish
2.13
record
2014-11-17 · diff ↗
2.12
record
2014-09-24 · diff ↗
2.11
record
2014-09-23 · diff ↗
2.10
record
2014-07-11 · diff ↗
2.9
record
2014-07-02 · diff ↗
2.8
record
2014-05-29 · diff ↗
2.7
record
2013-12-20 · diff ↗ ·
removed 1 export
densplot
2.6
record
2013-05-06 · diff ↗ ·
added 2 exports
print.simulate, plot.simulate
2.5
record
2013-04-29 · diff ↗
2.4
record
2013-04-22 · diff ↗ ·
removed 1 export
pattern:^[[:alpha:]]+

added 13 exports
bdgraph, phat, select, prob, bdgraph.sim, I.g, compare, densplot, plotcoda, traceplot, print.bdgraph, plot.bdgraph, summary.bdgraph
2.3
record
2013-04-08 · diff ↗
2.2
record
2013-03-24 · diff ↗
2.1
record
2013-03-17 · diff ↗
2.0
record
2013-02-05 · diff ↗ ·
removed 14 exports
bdgraph, phat, select, prob, bdgraph.sim, I.g, compare, plotcoda, traceplot, print.bdgraph, plot.bdgraph, summary.bdgraph, print.simulate, plot.simulate

added 1 export
pattern:^[[:alpha:]]+
1.2
record
2012-10-24 · diff ↗
1.1
record
2012-10-08 · diff ↗
1.0
record
2012-09-26
R
R 2.15.0 released · 2012-03-30

Package metadata

First published: 2012-09-26
Total releases: 80 / 14 yrs
License: GPL (>= 2) OSI
Minimum R: ≥ 2.10
Bundled data: 49 KB / 3 files
Download size: 873 KB

Appears in task views

Bayesian Inference Graphical Models High-Performance and Parallel Computing with R Machine Learning & Statistical Learning

Cite

Cite this package

Run in R for the authors' entry:

citation("BDgraph")

The package provides a citation file, so citation() returns the authors' own entry.

It points to 10.18637/jss.v089.i03.

Cite the R Observatory

For a number measured here: a download total, a coverage figure, an archival date.

Format

APA

Balamuta, J. J. (2026). R Observatory: Metrics for BDgraph version 2.74 [Data set]. HJJB, LLC. Data release v2026-10-21. https://doi.org/10.5281/zenodo.21843040

From data release v2026-10-21, which the citation names so these numbers can be found later. More on citing and the projects behind them.

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