cqnNormCommonSamples

Matching microarray and RNA-seq data from human lymphoblastoid cell lines

Bundled with tweeDEseqCountData · exported, loads via data()

Class

cqn

Elements

Missing

Format

rda · gzip

version 2 · 30 MB

File

data/commonPickrell1Huang.rda

Fingerprint

ccbd2ded

Format documented

Yes

Source

R.S. Huang, S. Duan, W.K. Bleibel, E.O. Kistner, W. Zhang, T.A. Clark, T.X. Chen, A.C. Schweitzer, J.E. Blume, N.J. Cox and M.E. Dolan, *Proc. Natl. Acad. Sci. USA*, 104(23):9758-9763, 2007. J.K. Pickrell, J.C. Marioni, A.A Pai, J.F. Degner, B.E. Engelhardt, E. Nkadori, J.B Veyrieras, M. Stephens, Y. Gilad, and J.K. Pritchard, *Nature*, 464:768-772, 2010.

Structure

Distinct

Element length

0 – 987,768

Total length

3,038,567

Elements

Element

Type

Distinct

Missing

Summary

counts

integer

13,113

0 – 218614·27,438 × 36 matrixmean 391.2

Min.

1st Qu.

Median

Mean

391.194

3rd Qu.

212

Max.

218614

Std. dev

2170.72

Skewness

29.03

Kurtosis

1435

Zeros

145,152

Outliers

124,1880 low · 124188 high

lengths

numeric

7,354

46 – 101518mean 2701

Min.

1st Qu.

897

Median

2110

Mean

2701.25

3rd Qu.

3743

Max.

101518

Std. dev

2441.38

Skewness

4.341

Kurtosis

106.4

Outliers

9240 low · 924 high

sizeFactors

numeric

4727897 – 14470951mean 1.073e+7

Min.

4727897

1st Qu.

8.74439e+6

Median

1.14539e+7

Mean

1.07336e+7

3rd Qu.

12646583

Max.

14470951

Std. dev

2.61032e+6

Skewness

-0.7189

Kurtosis

-0.6

subindex

integer

12,866

2 – 27438mean 1.374e+4

Min.

1st Qu.

6819.5

Median

13841.5

Mean

13741.1

3rd Qu.

20525.5

Max.

27438

Std. dev

7925.33

Skewness

-0.0098

Kurtosis

-1.204

Order

ascending

numeric

87,309

-3.8551 – 14.0533·27,438 × 36 matrixmean 1.503

Min.

-3.8551

1st Qu.

-1.7761

Median

1.6737

Mean

1.5029

3rd Qu.

4.3528

Max.

14.0533

Std. dev

3.5231

Skewness

0.1541

Kurtosis

-1.017

Outliers

190 low · 19 high

numeric

25,450

0.1863 – 0.7825mean 0.495

Min.

0.1863

1st Qu.

0.4274

Median

0.486

Mean

0.495

3rd Qu.

0.5595

Max.

0.7825

Std. dev

0.084

Skewness

0.2878

Kurtosis

-0.7104

Outliers

121 low · 11 high

offset

numeric

646,237

-4.7803 – 6.2267·27,438 × 36 matrixmean 0.8216

Min.

-4.7803

1st Qu.

0.2256

Median

0.648

Mean

0.8216

3rd Qu.

1.2851

Max.

6.2267

Std. dev

0.8837

Skewness

0.8614

Kurtosis

0.8067

Outliers

29,779171 low · 29608 high

offset0

numeric

5.0017

func1

numeric

3,636

1.3245 – 4.9469·101 × 36 matrixmean 3.991

Min.

1.3245

1st Qu.

3.6417

Median

4.1427

Mean

3.9915

3rd Qu.

4.4553

Max.

4.9469

Std. dev

0.5949

Skewness

-0.9361

Kurtosis

0.4489

Outliers

5050 low · 0 high

func2

numeric

3,636

-0.3815 – 11.1575·101 × 36 matrixmean 5.149

Min.

-0.3815

1st Qu.

4.6239

Median

5.1518

Mean

5.149

3rd Qu.

5.753

Max.

11.1575

Std. dev

1.6568

Skewness

-0.2286

Kurtosis

1.577

Outliers

643350 low · 293 high

grid1

numeric

101

0.3088 – 0.7471mean 0.528

Min.

0.3088

1st Qu.

0.4184

Median

0.528

Mean

0.528

3rd Qu.

0.6375

Max.

0.7471

Std. dev

0.1284

Skewness

9.796e-15

Kurtosis

-1.236

Order

ascending

grid2

numeric

101

-4.4422 – 6.6656mean 1.112

Min.

-4.4422

1st Qu.

-1.6653

Median

1.1117

Mean

1.1117

3rd Qu.

3.8886

Max.

6.6656

Std. dev

3.2546

Skewness

1.301e-15

Kurtosis

-1.236

Order

ascending

knots1

numeric

0.3732 – 0.6411mean 0.4955

Min.

0.3732

1st Qu.

0.4251

Median

0.4818

Mean

0.4955

3rd Qu.

0.5561

Max.

0.6411

Std. dev

0.106

Skewness

0.1901

Kurtosis

-1.874

Order

ascending

knots2

numeric

-1.652 – 3.1752mean 1.066

Min.

-1.652

1st Qu.

0.3057

Median

1.3805

Mean

1.0658

3rd Qu.

2.1199

Max.

3.1752

Std. dev

1.8455

Skewness

-0.3159

Kurtosis

-1.691

Order

ascending

call

object

–

empty

Version history

Version	Released	Size	Change	Stored as	Confidence
3.23	2026-04-28	15 elements	Unchanged	rda · gzip version 2 · 30 MB	exact
3.22	2025-10-29	15 elements	Unchanged	rda · gzip version 2 · 30 MB	exact
3.21	2025-04-15	15 elements	Unchanged	rda · gzip version 2 · 30 MB	exact
3.20	2024-10-29	15 elements	Unchanged	rda · gzip version 2 · 30 MB	exact
3.19	2024-04-30	15 elements	Unchanged	rda · gzip version 2 · 30 MB	exact
3.18	2023-10-24	15 elements	Unchanged	rda · gzip version 2 · 30 MB	exact
3.17	2023-07-05	15 elements	Unchanged	rda · gzip version 2 · 30 MB	exact
3.16	2022-11-01	15 elements	Unchanged	rda · gzip version 2 · 30 MB	exact
3.15	2022-04-26	15 elements	Unchanged	rda · gzip version 2 · 30 MB	exact
3.14	2021-10-26	15 elements	Unchanged	rda · gzip version 2 · 30 MB	exact
3.13	2021-05-19	15 elements	Unchanged	rda · gzip version 2 · 30 MB	exact
3.12	2020-10-27	15 elements	Unchanged	rda · gzip version 2 · 30 MB	exact
3.11	2020-04-27	15 elements	Unchanged	rda · gzip version 2 · 30 MB	exact
3.10	2019-10-29	15 elements	Unchanged	rda · gzip version 2 · 30 MB	exact
3.9	2019-05-02	15 elements	Unchanged	rda · gzip version 2 · 30 MB	exact
3.8	2018-10-30	15 elements	Unchanged	rda · gzip version 2 · 30 MB	exact
3.7	2018-04-30	15 elements	Unchanged	rda · gzip version 2 · 30 MB	exact
3.6	2017-10-30	15 elements	Unchanged	rda · gzip version 2 · 30 MB	exact
3.5	2017-08-16	15 elements	–	rda · gzip version 2 · 30 MB	exact