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annotEnsembl63

Annotation data from Ensemble Release 63

Bundled with tweeDEseqCountData · exported, loads via data()

Class
data.frame
Dimensions
50,451 × 8
Missing
50,929
Format
rda · xz
version 2 · 1.2 MB
File
data/annotEnsembl63.rda
Fingerprint
4367b985
Format documented
Yes
Source
Source not stated
About this object
A table with named columnsA bordered table: a header band ruled off from the body with an empty slot over each column where its name goes, and rows of cells under it that share every edge. Nothing is in any of them.

Equal-length columns presented as a table, R's standard rectangular format. R object catalogue

Declared attributes
Row names
Yes
Columns
Column
Type
Distinct
Missing
Summary
Symbol
factor
43,793
0
U61,332Y_RNA8575S_rRNA510snoU134667SK297U1130+43,787 more
Levels
43,793
Used
43,793
Rows per level, the 50 commonest of 43,793
U61,332Y_RNA8575S_rRNA510snoU134667SK297U1130U7129U484U382U269SNORD11252U6atac38SNORA7031SNORA3127U827U524SNORA4022SNORA2520U4atac17SNORA4813SNORA5113SNORA6313SNORA2611BTNL28C28C6orf108COL11A2P8DAQB-12N14.58DDX39B8DDX39BP18DDX39BP28DHX168ETF1P18FLOT18GNL18GPR53P8HCG228HCG238HCG48HCG4P38HCG4P58HCG4P78HLA-A8HLA-DMA8HLA-DMB8HLA-DPA18HLA-DPA28HLA-DPB18HLA-DPB28HLA-DQA28
Chr
factor
202
0
15,11223,81432,88462,75572,73852,697+196 more
Levels
202
Used
202
Rows per level, the 50 commonest of 202
15,11223,81432,88462,75572,73852,69742,462X2,31192,308102,17282,148112,100171,982191,914121,748141,429161,282201,255151,180221,171131,1692168618528Y507HSCHR6_MHC_COX298HSCHR6_MHC_QBL283HSCHR6_MHC_DBB280HSCHR6_MHC_SSTO271HSCHR6_MHC_MANN262HSCHR6_MHC_MCF258HSCHR6_MHC_APD160MT37GL000220.118GL000205.18GL000192.17HSCHR5_1_CTG17GL000219.16GL000223.15GL000212.14GL000224.14GL000228.14GL000193.13GL000194.13GL000222.13GL000230.13GL000240.13GL000247.13HG186_PATCH3GL000191.12GL000195.12
Start
integer
50,238
0
577 – 249230780mean 7.575e+7
Min.
577
1st Qu.
30583620
Median
60497136
Mean
7.57539e+7
3rd Qu.
113319867
Max.
249230780
Std. dev
5.69937e+7
Skewness
0.8314
Kurtosis
-0.0261
Outliers
3770 low · 377 high
End
integer
50,296
0
647 – 249231242mean 7.579e+7
Min.
647
1st Qu.
3.05958e+7
Median
60560756
Mean
7.57859e+7
3rd Qu.
1.13348e+8
Max.
249231242
Std. dev
5.69963e+7
Skewness
0.8313
Kurtosis
-0.0264
Outliers
3780 low · 378 high
EntrezID
factor
18,609
30,585
808641582941425531312330310101078102118+18,603 more
Levels
18,609
Used
18,609
Rows per level, the 50 commonest of 18,609
808641582941425531312330310101078102118106658110748116511813564481709548203068825919782653182669282670782671682794830834831058310883109831138311583118831208346171840125084050842778434084421848442186844219484439847588562448569685698868908689186992871248714887178772687919879408803528807368
Description
factor
25,330
0
18,860U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]1,332Y RNA [Source:RFAM;Acc:RF00019]8575S ribosomal RNA [Source:RFAM;Acc:RF00001]510Small nucleolar RNA U13 [Source:RFAM;Acc:RF01210]4667SK RNA [Source:RFAM;Acc:RF00100]297+25,324 more
Levels
25,330
Used
25,330
Rows per level, the 50 commonest of 25,330
18,860U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]1,332Y RNA [Source:RFAM;Acc:RF00019]8575S ribosomal RNA [Source:RFAM;Acc:RF00001]510Small nucleolar RNA U13 [Source:RFAM;Acc:RF01210]4667SK RNA [Source:RFAM;Acc:RF00100]297U1 spliceosomal RNA [Source:RFAM;Acc:RF00003]130U7 small nuclear RNA [Source:RFAM;Acc:RF00066]129U4 spliceosomal RNA [Source:RFAM;Acc:RF00015]84Small nucleolar RNA U3 [Source:RFAM;Acc:RF00012]82U2 spliceosomal RNA [Source:RFAM;Acc:RF00004]69Small nucleolar RNA SNORD112 [Source:RFAM;Acc:RF01169]51U6atac minor spliceosomal RNA [Source:RFAM;Acc:RF00619]38Small nucleolar RNA SNORA70 [Source:RFAM;Acc:RF00156]30U8 small nucleolar RNA [Source:RFAM;Acc:RF00096]27Small nucleolar RNA SNORA31 [Source:RFAM;Acc:RF00322]26U5 spliceosomal RNA [Source:RFAM;Acc:RF00020]24Small nucleolar RNA SNORA40 [Source:RFAM;Acc:RF00561]21Small nucleolar RNA SNORA25 [Source:RFAM;Acc:RF00402]19U4atac minor spliceosomal RNA [Source:RFAM;Acc:RF00618]17Small nucleolar RNA SNORA48 [Source:RFAM;Acc:RF00554]12Small nucleolar RNA SNORA51 [Source:RFAM;Acc:RF00432]12Small nucleolar RNA SNORA63 [Source:RFAM;Acc:RF00092]12Small nucleolar RNA SNORA26 [Source:RFAM;Acc:RF00568]10butyrophilin-like 2 (MHC class II associated) [Source:HGNC Symbol;Acc:1142]8chromosome 6 open reading frame 10 [Source:HGNC Symbol;Acc:13922]8collagen, type XI, alpha 2 pseudogene [Source:HGNC Symbol;Acc:13947]8complement component 2 [Source:HGNC Symbol;Acc:1248]8DEAD (Asp-Glu-Ala-Asp) box polypeptide 39B pseudogene 1 [Source:HGNC Symbol;Acc:33450]8DEAD (Asp-Glu-Ala-Asp) box polypeptide 39B pseudogene 2 [Source:HGNC Symbol;Acc:33461]8DEAD (Asp-Glu-Ala-Asp) box polypeptide 39B [Source:HGNC Symbol;Acc:13917]8DEAH (Asp-Glu-Ala-His) box polypeptide 16 [Source:HGNC Symbol;Acc:2739]8eukaryotic translation termination factor 1 pseudogene 1 [Source:HGNC Symbol;Acc:3478]8flotillin 1 [Source:HGNC Symbol;Acc:3757]8G protein-coupled receptor 53, pseudogene [Source:HGNC Symbol;Acc:4509]8guanine nucleotide binding protein-like 1 [Source:HGNC Symbol;Acc:4413]8heterogeneous nuclear ribonucleoprotein A1 pseudogene 2 [Source:HGNC Symbol;Acc:13958]8HLA complex group 22 [Source:HGNC Symbol;Acc:27780]8HLA complex group 23 [Source:HGNC Symbol;Acc:19713]8HLA complex group 4 (non-protein coding) [Source:HGNC Symbol;Acc:21241]8HLA complex group 4 pseudogene 3 [Source:HGNC Symbol;Acc:22922]8HLA complex group 4 pseudogene 5 [Source:HGNC Symbol;Acc:22925]8HLA complex group 4 pseudogene 7 [Source:HGNC Symbol;Acc:22926]8KIAA1949 [Source:HGNC Symbol;Acc:29413]8leukocyte specific transcript 1 [Source:HGNC Symbol;Acc:14189]8lymphotoxin beta (TNF superfamily, member 3) [Source:HGNC Symbol;Acc:6711]8major histocompatibility complex, class I, A [Source:HGNC Symbol;Acc:4931]8major histocompatibility complex, class I, H (pseudogene) [Source:HGNC Symbol;Acc:4965]8major histocompatibility complex, class II, DM alpha [Source:HGNC Symbol;Acc:4934]8major histocompatibility complex, class II, DM beta [Source:HGNC Symbol;Acc:4935]8
Length
integer
7,488
10,172
8 – 101518mean 2159
Min.
8
1st Qu.
578
Median
1379
Mean
2158.97
3rd Qu.
3022
Max.
101518
Std. dev
2253.19
Skewness
4.318
Kurtosis
103.9
Outliers
1,7830 low · 1783 high
Longest gap
7,941
Leading
7,941
Trailing
115
GCcontent
numeric
33,434
10,172
0.1481 – 0.8197mean 0.4882
Min.
0.1481
1st Qu.
0.4232
Median
0.4789
Mean
0.4882
3rd Qu.
0.5484
Max.
0.8197
Std. dev
0.0827
Skewness
0.3327
Kurtosis
-0.5226
Outliers
606 low · 54 high
Longest gap
7,941
Leading
7,941
Trailing
115
Version history
VersionReleasedSizeChangeStored asConfidence
3.232026-04-2850,451 × 8Unchangedrda · xz
version 2 · 1.2 MB
exact
3.222025-10-2950,451 × 8Unchangedrda · xz
version 2 · 1.2 MB
exact
3.212025-04-1550,451 × 8Unchangedrda · xz
version 2 · 1.2 MB
exact
3.202024-10-2950,451 × 8Unchangedrda · xz
version 2 · 1.2 MB
exact
3.192024-04-3050,451 × 8Unchangedrda · xz
version 2 · 1.2 MB
exact
3.182023-10-2450,451 × 8Unchangedrda · xz
version 2 · 1.2 MB
exact
3.172023-07-0550,451 × 8Unchangedrda · xz
version 2 · 1.2 MB
exact
3.162022-11-0150,451 × 8Unchangedrda · xz
version 2 · 1.2 MB
exact
3.152022-04-2650,451 × 8Unchangedrda · xz
version 2 · 1.2 MB
exact
3.142021-10-2650,451 × 8Unchangedrda · xz
version 2 · 1.2 MB
exact
3.132021-05-1950,451 × 8Unchangedrda · xz
version 2 · 1.2 MB
exact
3.122020-10-2750,451 × 8Unchangedrda · xz
version 2 · 1.2 MB
exact
3.112020-04-2750,451 × 8Unchangedrda · xz
version 2 · 1.2 MB
exact
3.102019-10-2950,451 × 8Unchangedrda · xz
version 2 · 1.2 MB
exact
3.92019-05-0250,451 × 8Unchangedrda · xz
version 2 · 1.2 MB
exact
3.82018-10-3050,451 × 8Unchangedrda · xz
version 2 · 1.2 MB
exact
3.72018-04-3050,451 × 8Unchangedrda · xz
version 2 · 1.2 MB
exact
3.62017-10-3050,451 × 8Unchangedrda · xz
version 2 · 1.2 MB
exact
3.52017-08-1650,451 × 8–rda · xz
version 2 · 1.2 MB
exact

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