demoProfiles
ChIP-Seq profiles of region chr7:61968807-61969730 related to enhancers H3K27ac and H3K4me1 (for demonstration purpose)
Bundled with similaRpeak · exported, loads via data()
Class
list
Elements
4
Missing
0
Format
rda · gzip
version 2 · 2.1 KB
File
data/demoProfiles.RData
Fingerprint
581c8d73
Format documented
Yes
Source
The Encyclopedia of DNA Elements (ENCODE) (DCC accession: ENCFF000MZT)
About this object
R's general-purpose container. Elements can be any type and any size. R object catalogue
Structure
Distinct
4
Nesting depth
2
Element length
2 – 2
Total length
8
Elements
Element
Type
Distinct
Missing
Summary
chr2.70360770.70361098list20numeric
Element class
numeric
Element length
329 – 329
Total length
658
What is inside it
Element
Type
Distinct
Missing
Summary
H3K27acnumeric1703 – 20mean 8.775
Min.
3
1st Qu.
6
Median
8
Mean
8.7751
3rd Qu.
10
Max.
20
Std. dev
3.6095
Skewness
1.168
Kurtosis
1.438
Outliers
200 low · 20 high
H3K4me1numeric1902 – 21mean 8.553
Min.
2
1st Qu.
5
Median
8
Mean
8.5532
3rd Qu.
10
Max.
21
Std. dev
4.2546
Skewness
1.151
Kurtosis
0.9332
Outliers
200 low · 20 high
chr3.73159773.73160145list20numeric
Element class
numeric
Element length
373 – 373
Total length
746
What is inside it
Element
Type
Distinct
Missing
Summary
H3K27acnumeric8200 – 110mean 19.79
Min.
0
1st Qu.
0
Median
5
Mean
19.7882
3rd Qu.
30
Max.
110
Std. dev
28.8456
Skewness
1.596
Kurtosis
1.648
Zeros
154
Outliers
250 low · 25 high
H3K4me1numeric3900 – 44mean 8.879
Min.
0
1st Qu.
1
Median
3
Mean
8.8794
3rd Qu.
15
Max.
44
Std. dev
10.7235
Skewness
1.361
Kurtosis
1.284
Zeros
71
Outliers
130 low · 13 high
chr8.43092918.43093442list20numeric
Element class
numeric
Element length
525 – 525
Total length
1,050
What is inside it
Element
Type
Distinct
Missing
Summary
H3K27acnumeric4400 – 82mean 7.149
Min.
0
1st Qu.
0
Median
0
Mean
7.1486
3rd Qu.
3
Max.
82
Std. dev
16.9762
Skewness
3.094
Kurtosis
9.272
Zeros
339
Outliers
1120 low · 112 high
H3K4me1numeric13500 – 1404mean 120.6
Min.
0
1st Qu.
4
Median
7
Mean
120.579
3rd Qu.
43
Max.
1404
Std. dev
289.286
Skewness
3.178
Kurtosis
9.626
Zeros
40
Outliers
1110 low · 111 high
chr19.27739373.27739767list20numeric
Element class
numeric
Element length
395 – 395
Total length
790
What is inside it
Element
Type
Distinct
Missing
Summary
H3K27acnumeric2700 – 38mean 4.023
Min.
0
1st Qu.
0
Median
1
Mean
4.0228
3rd Qu.
1
Max.
38
Std. dev
9.9793
Skewness
2.74
Kurtosis
5.979
Zeros
195
Outliers
570 low · 57 high
H3K4me1numeric5500 – 314mean 32.29
Min.
0
1st Qu.
0
Median
3
Mean
32.2886
3rd Qu.
7
Max.
314
Std. dev
82.8705
Skewness
2.759
Kurtosis
6.009
Zeros
101
Outliers
560 low · 56 high
Version history
| Version | Released | Size | Change | Stored as | Confidence |
|---|---|---|---|---|---|
| 3.23 | 2026-04-28 | 4 elements | Unchanged | rda · gzip version 2 · 2.1 KB | exact |
| 3.22 | 2025-10-29 | 4 elements | Unchanged | rda · gzip version 2 · 2.1 KB | exact |
| 3.21 | 2025-04-15 | 4 elements | Unchanged | rda · gzip version 2 · 2.1 KB | exact |
| 3.20 | 2024-10-29 | 4 elements | Unchanged | rda · gzip version 2 · 2.1 KB | exact |
| 3.19 | 2024-04-30 | 4 elements | Unchanged | rda · gzip version 2 · 2.1 KB | exact |
| 3.18 | 2023-10-24 | 4 elements | Unchanged | rda · gzip version 2 · 2.1 KB | exact |
| 3.17 | 2023-04-25 | 4 elements | Unchanged | rda · gzip version 2 · 2.1 KB | exact |
| 3.16 | 2022-11-01 | 4 elements | Unchanged | rda · gzip version 2 · 2.1 KB | exact |
| 3.15 | 2022-04-26 | 4 elements | Unchanged | rda · gzip version 2 · 2.1 KB | exact |
| 3.14 | 2021-10-26 | 4 elements | Unchanged | rda · gzip version 2 · 2.1 KB | exact |
| 3.13 | 2021-05-19 | 4 elements | Unchanged | rda · gzip version 2 · 2.1 KB | exact |
| 3.12 | 2020-10-27 | 4 elements | Unchanged | rda · gzip version 2 · 2.1 KB | exact |
| 3.11 | 2020-04-27 | 4 elements | Unchanged | rda · gzip version 2 · 2.1 KB | exact |
| 3.10 | 2019-10-29 | 4 elements | Unchanged | rda · gzip version 2 · 2.1 KB | exact |
| 3.9 | 2019-05-02 | 4 elements | Unchanged | rda · gzip version 2 · 2.1 KB | exact |
| 3.8 | 2018-10-30 | 4 elements | Unchanged | rda · gzip version 2 · 2.1 KB | exact |
| 3.7 | 2018-04-30 | 4 elements | Unchanged | rda · gzip version 2 · 2.1 KB | exact |
| 3.6 | 2017-10-30 | 4 elements | Unchanged | rda · gzip version 2 · 2.1 KB | exact |
| 3.5 | 2017-04-24 | 4 elements | Unchanged | rda · gzip version 2 · 2.1 KB | exact |
| 3.4 | 2016-10-17 | 4 elements | Unchanged | rda · gzip version 2 · 2.1 KB | exact |
| 3.3 | 2016-05-15 | 4 elements | Unchanged | rda · gzip version 2 · 2.1 KB | exact |
| 3.2 | 2015-10-13 | 4 elements | Unchanged | rda · gzip version 2 · 2.1 KB | exact |
| 3.1 | 2015-04-16 | 4 elements | – | rda · gzip version 2 · 2.1 KB | exact |