day_2_cardio_cell_sample
One of the two example single-cell count matrices to be used for training `scGPS` model
Bundled with scGPS · exported, loads via data()
Class
list
Elements
3
Missing
0
Format
rda · bzip2
version 2 · 953 KB
File
data/day_2_cardio_cell_sample.rda
Fingerprint
1a367006
Format documented
Yes
Source
Dr Joseph Powell's laboratory, IMB, UQ
About this object
R's general-purpose container. Elements can be any type and any size. R object catalogue
Structure
Distinct
3
Nesting depth
2
Element length
2 – 2,950,000
Total length
2,950,592
Nested rows
5,000
Nested columns
2
Elements
Element
Type
Distinct
Missing
Summary
dat2_countsnumeric16,80500 – 502.957·5,000 × 590 matrixmean 0.4986
Min.
0
1st Qu.
0
Median
0
Mean
0.4986
3rd Qu.
0
Max.
502.957
Std. dev
3.3658
Skewness
34.05
Kurtosis
1985
Zeros
2,455,558
dat2_clustersinteger301 – 3mean 1.897
Min.
1
1st Qu.
1
Median
2
Mean
1.8966
3rd Qu.
3
Max.
3
Std. dev
0.804
Skewness
0.1883
Kurtosis
-1.432
dat2geneInfolist20factor·5,000 rows nested
Element class
factor
Element length
5,000 – 5,000
Total length
10,000
Nested rows
5,000
What is inside it
Element
Type
Distinct
Missing
Summary
GeneSymbolfactor5,0000A2M-AS11AAED11AAK11AAMP1AAR21AATK1+4,994 more
A2M-AS11AAED11AAK11AAMP1AAR21AATK1+4,994 more
Levels
5,000
Used
5,000
Rows per level, the 50 commonest of 5,000
A2M-AS11AAED11AAK11AAMP1AAR21AATK1ABCA11ABCA21ABCC101ABCC121ABCC41ABCC51ABCD11ABCD41ABCF21ABCG11ABHD12B1ABHD17A1ABHD17C1ABHD51ABI21ABL11ABT11ABTB11AC002116.71AC002117.11AC002310.71AC002454.11AC004069.21AC004076.51AC004381.61AC004448.51AC004540.51AC004556.11AC004878.21AC005076.51AC005224.21AC005329.71AC005339.21AC005592.21AC005592.31AC005609.201AC005786.51AC007040.111AC007161.51AC007228.111AC007250.41AC007277.31AC007292.61AC007325.41
EnsemblIDfactor5,0000ENSG000000000051ENSG000000004191ENSG000000009381ENSG000000014611ENSG000000015611ENSG000000016291+4,994 more
ENSG000000000051ENSG000000004191ENSG000000009381ENSG000000014611ENSG000000015611ENSG000000016291+4,994 more
Levels
5,000
Used
5,000
Rows per level, the 50 commonest of 5,000
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
Every nested table has these 2 columns
- GeneSymbol
- EnsemblID
Version history
| Version | Released | Size | Change | Stored as | Confidence |
|---|---|---|---|---|---|
| 3.23 | 2026-04-28 | 3 elements | Unchanged | rda · bzip2 version 2 · 953 KB | exact |
| 3.22 | 2025-10-29 | 3 elements | Unchanged | rda · bzip2 version 2 · 953 KB | exact |
| 3.21 | 2025-04-15 | 3 elements | Unchanged | rda · bzip2 version 2 · 953 KB | exact |
| 3.20 | 2024-10-29 | 3 elements | Unchanged | rda · bzip2 version 2 · 953 KB | exact |
| 3.19 | 2024-04-30 | 3 elements | Unchanged | rda · bzip2 version 2 · 953 KB | exact |
| 3.18 | 2023-10-24 | 3 elements | Unchanged | rda · bzip2 version 2 · 953 KB | exact |
| 3.17 | 2023-05-01 | 3 elements | Unchanged | rda · bzip2 version 2 · 953 KB | exact |
| 3.16 | 2023-01-19 | 3 elements | Unchanged | rda · bzip2 version 2 · 953 KB | exact |
| 3.15 | 2022-04-26 | 3 elements | Unchanged | rda · bzip2 version 2 · 953 KB | exact |
| 3.14 | 2021-10-26 | 3 elements | Unchanged | rda · bzip2 version 2 · 953 KB | exact |
| 3.13 | 2021-05-19 | 3 elements | Unchanged | rda · bzip2 version 2 · 953 KB | exact |
| 3.12 | 2020-10-27 | 3 elements | Unchanged | rda · bzip2 version 2 · 953 KB | exact |
| 3.11 | 2020-04-27 | 3 elements | Unchanged | rda · bzip2 version 2 · 953 KB | exact |
| 3.10 | 2019-10-29 | 3 elements | – | rda · bzip2 version 2 · 953 KB | exact |