scmod1
Subtype Clustering Model using ESR1, ERBB2 and AURKA modules for identification of breast cancer molecular subtypes (Desmedt et al 2008)
Bundled with genefu · exported, loads via data()
Class
list
Elements
3
Missing
0
Format
rda · gzip
version 2 · 10 KB
File
data/scmod1.rda
Fingerprint
fae2ba20
Format documented
Yes
Source
http://clincancerres.aacrjournals.org/content/14/16/5158.abstract?ck=nck
About this object
R's general-purpose container. Elements can be any type and any size. R object catalogue
Structure
Distinct
3
Nesting depth
3
Element length
1 – 3
Total length
7
Elements
Element
Type
Distinct
Missing
Summary
parameterslist30nested
Element length
3 – 7
Total length
16
Nesting depth
2
What is inside it
Element
Type
Distinct
Missing
Summary
pronumeric300.157 – 0.5552mean 0.3333
Min.
0.157
1st Qu.
0.2224
Median
0.2878
Mean
0.3333
3rd Qu.
0.4215
Max.
0.5552
Std. dev
0.203
Skewness
0.2131
Kurtosis
-2.333
meannumeric60-0.7706 – 0.679·2 × 3 matrixmean -0.064
Min.
-0.7706
1st Qu.
-0.6005
Median
-0.0846
Mean
-0.064
3rd Qu.
0.4658
Max.
0.679
Std. dev
0.6269
Skewness
0.0404
Kurtosis
-2.009
variancelist70nested
Element length
1 – 12
Total length
22
cutoff.AURKA
numeric
1
0
-0.2882
modlist30character
Element class
character
Element length
84 – 1,407
Total length
2,178
What is inside it
Element
Type
Distinct
Missing
Summary
ESR1
character
1,407
0
1 – 12 characters
ERBB2
character
84
0
1 – 12 characters
AURKA
character
687
0
1 – 12 characters
Version history
| Version | Released | Size | Change | Stored as | Confidence |
|---|---|---|---|---|---|
| 1.0.9 | 2010-08-25 | 3 elements | Unchanged | rda · gzip version 2 · 10 KB | exact |
| 1.0.8 | 2010-07-26 | 3 elements | – | rda · gzip version 2 · 10 KB | exact |