yeast_de
Differential expression results for yeast RNA-seq.
Bundled with fenr · exported, loads via data()
Class
tibble
tbl_df/tbl/data.frame
Dimensions
6,298 × 6
Missing
0
Format
rda · bzip2
version 2 · 224 KB
File
data/yeast_de.rda
Fingerprint
42671373
About this object
A tibble. It is a data.frame with different defaults. It never converts strings to factors, never adds row names, and prints a few rows rather than all of them. A column of it can itself hold a list, which is how nested tables are stored. R object catalogue
Columns
Column
Type
Distinct
Missing
Summary
gene_id
character
6,298
0
4 – 10 characters
gene_symbol
character
6,298
0
2 – 10 characters
logFCnumeric6,2980-4.3929 – 6.7936mean 0.0554
Min.
-4.3929
1st Qu.
-0.2316
Median
-0.0015
Mean
0.0554
3rd Qu.
0.287
Max.
6.7936
Std. dev
0.6206
Skewness
0.8641
Kurtosis
9.527
Outliers
515191 low · 324 high
logCPMnumeric6,2980-1.6592 – 14.6016mean 5.584
Min.
-1.6592
1st Qu.
4.6374
Median
5.8572
Mean
5.5844
3rd Qu.
6.9734
Max.
14.6016
Std. dev
2.3477
Skewness
-0.5432
Kurtosis
0.7233
Outliers
495413 low · 82 high
PValuenumeric6,29806.5253e-16 – 1mean 0.2232
Min.
6.5253e-16
1st Qu.
0.0032
Median
0.0679
Mean
0.2232
3rd Qu.
0.3803
Max.
1
Std. dev
0.2872
Skewness
1.201
Kurtosis
0.1651
Outliers
1190 low · 119 high
FDRnumeric4,71602.2838e-12 – 1mean 0.2799
Min.
2.2838e-12
1st Qu.
0.0128
Median
0.1358
Mean
0.2799
3rd Qu.
0.5069
Max.
1
Std. dev
0.3097
Skewness
0.8722
Kurtosis
-0.6191
Version history
| Version | Released | Rows × Cols | Change | Stored as | Confidence |
|---|---|---|---|---|---|
| 3.23 | 2026-07-24 | 6,298 × 6 | Unchanged | rda · bzip2 version 2 · 224 KB | exact |
| 3.22 | 2026-03-26 | 6,298 × 6 | Unchanged | rda · bzip2 version 2 · 224 KB | exact |
| 3.21 | 2025-09-23 | 6,298 × 6 | Unchanged | rda · bzip2 version 2 · 224 KB | exact |
| 3.20 | 2025-02-20 | 6,298 × 6 | Unchanged | rda · bzip2 version 2 · 224 KB | exact |
| 3.19 | 2024-06-14 | 6,298 × 6 | Unchanged | rda · bzip2 version 2 · 224 KB | exact |
| 3.18 | 2024-04-11 | 6,298 × 6 | – | rda · bzip2 version 2 · 224 KB | exact |