fenr
Bioc currentFast functional enrichment for interactive applications
Release Lineage
Entered 3.18 · Oct 25, 2023
Current · Requires R 4.6
Description
Perform fast functional enrichment on feature lists (like genes or proteins) using the hypergeometric distribution. Tailored for speed, this package is ideal for interactive platforms such as Shiny. It supports the retrieval of functional data from sources like GO, KEGG, Reactome, Bioplanet and WikiPathways. By downloading and preparing data first, it allows for rapid successive tests on various feature selections without the need for repetitive, time-consuming preparatory steps typical of other packages.
Test coverage
Line coverage
–
Expression
–
Tests / Examples
–
Functions
71 17 exported
Complexity
2.1 avg / 11 max
Call network
71 nodes / 98 edges
Test coverage is not measured for Bioconductor packages; nodes fall back to a neutral fill.
Call graph
Open call graph →Lowest coverage
Per-function coverage is not measured for this package yet.
Code
Structure
Lines of code
4,619
Files
68
Compiled share
0%
Has compiled src
No
Language breakdown
API
Exported functions
17
Internal functions
54
Recent export changes
Testing & CI
Has tests
Yes
Test-to-code ratio
0.58
testthat edition
–
CI present
No
CI type
[]
PR gated
No
Docs
Roxygen coverage
100%
Health & Security signals
Informational signals; not verdicts.
on.exit coverage
0%
Unsafe pattern score
0
Dep constraint coverage
0%
Secret pattern count
0
Bundled 3rd-party code
2 items
Portability & License
Min R version
4.1.0
System requirements
–
C++ standard
–
License
MIT + file LICENSE
License flags
SPDX valid, OSI approved
History
Versions
6
First release
2024-04-11
Latest release
2026-07-24
Avg cadence
184 days
Cold removal rate
–
Dep drift
1
LOC over versions
Per-file churn detail lives in the source pipeline: https://github.com/r-observatory/bioc-code-metrics.
Documentation
- Examples that run
- 59%
- Documented parameters
- 98%
- Return-value docs
- 100%
- References docs
- 0%
Datasets
| Name | Class | Rows × Cols | Also in |
|---|---|---|---|
| exmpl_all | vector | – | No other package |
| exmpl_sel | vector | – | No other package |
| go | list | – | No other package |
| go_species | tibble | 171 × 7 | No other package |
| yeast_de | tibble | 6,298 × 6 | No other package |
1 internal object is bundled for the package's own use and not listed here.
Topics
Depended on by (1)
Bioconductor (1)
People
- Marek Gierlinski author maintainer
Cite
Cite this package
Run in R for the authors' preferred citation:
citation("fenr")This is what citation() produces when a package has no citation file of its own. If it prints something else, use that.
Cite the R Observatory
For a number measured here: a download total, a coverage figure, an archival date.
From data release v2026-08-26, which the citation names so these numbers can be found later. More on citing and the projects behind them.