genomes

Bundled with decompTumor2Sig · provided in inst/extdata, read by path with system.file()

Class

list

Elements

Missing

Format

rda · gzip

version 2 · 9.5 KB

File

inst/extdata/Nik-Zainal_PMID_22608084-genomes-Alexandrov_3bases.Rdata

Fingerprint

1ef39f24

About this object

R's general-purpose container. Elements can be any type and any size. R object catalogue

Structure

Distinct

Element length

96 – 96

Total length

2,016

Elements

Element

Type

Distinct

Missing

Summary

PD3851a

numeric

0.0011 – 0.0421mean 0.0104

Min.

0.0011

1st Qu.

0.0049

Median

0.0081

Mean

0.0104

3rd Qu.

0.0126

Max.

0.0421

Std. dev

0.008

Skewness

1.584

Kurtosis

2.569

Outliers

80 low · 8 high

PD3890a

numeric

0.0013 – 0.0614mean 0.0104

Min.

0.0013

1st Qu.

0.0063

Median

0.0087

Mean

0.0104

3rd Qu.

0.0126

Max.

0.0614

Std. dev

0.0081

Skewness

3.243

Kurtosis

16.01

Outliers

50 low · 5 high

PD3904a

numeric

0.0009 – 0.0442mean 0.0104

Min.

0.0009

1st Qu.

0.0049

Median

0.0079

Mean

0.0104

3rd Qu.

0.0137

Max.

0.0442

Std. dev

0.0083

Skewness

1.966

Kurtosis

4.719

Outliers

50 low · 5 high

PD3905a

numeric

0.0007 – 0.0519mean 0.0104

Min.

0.0007

1st Qu.

0.0065

Median

0.0092

Mean

0.0104

3rd Qu.

0.0127

Max.

0.0519

Std. dev

0.0074

Skewness

2.569

Kurtosis

10.22

Outliers

40 low · 4 high

PD3945a

numeric

0.0007 – 0.0371mean 0.0104

Min.

0.0007

1st Qu.

0.0059

Median

0.0096

Mean

0.0104

3rd Qu.

0.0138

Max.

0.0371

Std. dev

0.0065

Skewness

1.149

Kurtosis

2.08

Outliers

20 low · 2 high

PD4005a

numeric

0.0008 – 0.1047mean 0.0104

Min.

0.0008

1st Qu.

0.0043

Median

0.0066

Mean

0.0104

3rd Qu.

0.0099

Max.

0.1047

Std. dev

0.0151

Skewness

4.302

Kurtosis

20.19

Outliers

80 low · 8 high

PD4006a

numeric

0.0012 – 0.0324mean 0.0104

Min.

0.0012

1st Qu.

0.0063

Median

0.0095

Mean

0.0104

3rd Qu.

0.0141

Max.

0.0324

Std. dev

0.0055

Skewness

0.8796

Kurtosis

1.244

Outliers

10 low · 1 high

PD4085a

numeric

0.0004 – 0.0479mean 0.0104

Min.

0.0004

1st Qu.

0.0049

Median

0.0082

Mean

0.0104

3rd Qu.

0.0143

Max.

0.0479

Std. dev

0.0083

Skewness

1.476

Kurtosis

2.991

Outliers

20 low · 2 high

PD4086a

numeric

0 – 0.0759mean 0.0104

Min.

1st Qu.

0.005

Median

0.0073

Mean

0.0104

3rd Qu.

0.0105

Max.

0.0759

Std. dev

0.0126

Skewness

3.579

Kurtosis

14.09

Zeros

Outliers

90 low · 9 high

PD4088a

numeric

0 – 0.0734mean 0.0104

Min.

1st Qu.

0.0034

Median

0.0065

Mean

0.0104

3rd Qu.

0.0125

Max.

0.0734

Std. dev

0.0115

Skewness

2.48

Kurtosis

8.39

Zeros

Outliers

90 low · 9 high

PD4103a

numeric

0.0002 – 0.0701mean 0.0104

Min.

0.0002

1st Qu.

0.0035

Median

0.0058

Mean

0.0104

3rd Qu.

0.0122

Max.

0.0701

Std. dev

0.012

Skewness

2.565

Kurtosis

7.608

Outliers

100 low · 10 high

PD4107a

numeric

0.0015 – 0.0406mean 0.0104

Min.

0.0015

1st Qu.

0.0064

Median

0.0089

Mean

0.0104

3rd Qu.

0.0127

Max.

0.0406

Std. dev

0.0066

Skewness

1.756

Kurtosis

4.781

Outliers

50 low · 5 high

PD4109a

numeric

0.0009 – 0.0679mean 0.0104

Min.

0.0009

1st Qu.

0.0042

Median

0.0078

Mean

0.0104

3rd Qu.

0.012

Max.

0.0679

Std. dev

0.0103

Skewness

2.712

Kurtosis

9.732

Outliers

90 low · 9 high

PD4115a

numeric

0.0012 – 0.0289mean 0.0104

Min.

0.0012

1st Qu.

0.0062

Median

0.01

Mean

0.0104

3rd Qu.

0.0142

Max.

0.0289

Std. dev

0.0056

Skewness

0.5594

Kurtosis

0.2552

Outliers

10 low · 1 high

PD4116a

numeric

0.0012 – 0.049mean 0.0104

Min.

0.0012

1st Qu.

0.0061

Median

0.0088

Mean

0.0104

3rd Qu.

0.0123

Max.

0.049

Std. dev

0.0072

Skewness

2.334

Kurtosis

8.614

Outliers

40 low · 4 high

PD4120a

numeric

0.0002 – 0.2571mean 0.0104

Min.

0.0002

1st Qu.

0.0005

Median

0.0009

Mean

0.0104

3rd Qu.

0.0024

Max.

0.2571

Std. dev

0.0377

Skewness

4.821

Kurtosis

23.92

Outliers

130 low · 13 high

PD4192a

numeric

0.002 – 0.0602mean 0.0104

Min.

0.002

1st Qu.

0.0061

Median

0.0082

Mean

0.0104

3rd Qu.

0.011

Max.

0.0602

Std. dev

0.0088

Skewness

3.206

Kurtosis

12.63

Outliers

80 low · 8 high

PD4194a

numeric

0.0007 – 0.06mean 0.0104

Min.

0.0007

1st Qu.

0.0034

Median

0.0064

Mean

0.0104

3rd Qu.

0.0128

Max.

0.06

Std. dev

0.0114

Skewness

2.329

Kurtosis

5.788

Outliers

80 low · 8 high

PD4198a

numeric

0.0004 – 0.0635mean 0.0104

Min.

0.0004

1st Qu.

0.0048

Median

0.0074

Mean

0.0104

3rd Qu.

0.0127

Max.

0.0635

Std. dev

0.0097

Skewness

2.662

Kurtosis

9.58

Outliers

60 low · 6 high

PD4199a

numeric

0.0003 – 0.1942mean 0.0104

Min.

0.0003

1st Qu.

0.0018

Median

0.0032

Mean

0.0104

3rd Qu.

0.0053

Max.

0.1942

Std. dev

0.0279

Skewness

4.701

Kurtosis

23.44

Outliers

140 low · 14 high

PD4248a

numeric

0.0016 – 0.0398mean 0.0104

Min.

0.0016

1st Qu.

0.0046

Median

0.0083

Mean

0.0104

3rd Qu.

0.0148

Max.

0.0398

Std. dev

0.0073

Skewness

1.286

Kurtosis

1.776

Outliers

10 low · 1 high

Declared attributes

Other attributes

Read by name, kind and length, with the value where it is short enough to show. No rule here knows what any of them means.

Attribute	Holds	Length	Value
split_labels	data.frame	1
split_type	character	1	array

Version history

Version	Released	Size	Change	Stored as	Confidence
3.23	2026-07-21	21 elements	Unchanged	rda · gzip version 2 · 9.5 KB	exact
3.22	2025-10-29	21 elements	Unchanged	rda · gzip version 2 · 9.5 KB	exact
3.21	2025-04-15	21 elements	Unchanged	rda · gzip version 2 · 9.5 KB	exact
3.20	2024-10-29	21 elements	Unchanged	rda · gzip version 2 · 9.5 KB	exact
3.19	2024-04-30	21 elements	Unchanged	rda · gzip version 2 · 9.5 KB	exact
3.18	2023-10-24	21 elements	Unchanged	rda · gzip version 2 · 9.5 KB	exact
3.17	2023-04-25	21 elements	Unchanged	rda · gzip version 2 · 9.5 KB	exact
3.16	2022-11-01	21 elements	Unchanged	rda · gzip version 2 · 9.5 KB	exact
3.15	2022-04-26	21 elements	Unchanged	rda · gzip version 2 · 9.5 KB	exact
3.14	2021-10-26	21 elements	Unchanged	rda · gzip version 2 · 9.5 KB	exact
3.13	2021-05-19	21 elements	Unchanged	rda · gzip version 2 · 9.5 KB	exact
3.12	2020-10-27	21 elements	Unchanged	rda · gzip version 2 · 9.5 KB	exact
3.11	2020-07-27	21 elements	Unchanged	rda · gzip version 2 · 9.5 KB	exact
3.10	2019-10-29	21 elements	Unchanged	rda · gzip version 2 · 9.5 KB	exact
3.9	2019-05-02	21 elements	–	rda · gzip version 2 · 9.5 KB	exact