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MmReferenceDB

Reference slides for Mouse oligos hybridizations

Bundled with arrayQuality · exported, loads via data()

Class
matrix
Dimensions
15 × 16
Missing
0
Format
rda · gzip
version 2 · 2.2 KB
File
data/MmReferenceDB.RData
Fingerprint
ed4f4380
Source
These data were provided by members of the UCSF Shared functional genomics core lab.
About this object
A flat block of values with dimensionsA block of cells sharing every edge, with nothing above the columns and nothing in it: a name here is hung on the whole block rather than on one column.

A single vector with a dim attribute. All elements share one type. R object catalogue

Values

Computed over every cell in the object, reading it as one vector.

numeric
Cells
240
Missing
0
Min.
-161.247
1st Qu.
-6.88992
Median
-0.114924
Mean
-4.64304
3rd Qu.
2.85297
Max.
12.1457
Std. dev
21.9782
Distinct
237
Skewness
-4.444
Kurtosis
23.5
Outliers
19 19 low · 0 high
Margins

The mean of each row, and of each column, summarised. Reading every cell as one vector gives a matrix and its transpose the same answer; these do not.

MarginMin.1st Qu.MedianMean3rd Qu.Max.Std. dev
Rows-68.861-5.1113-0.17124-4.6432.501710.71919.205
Columns-11.354-6.3273-3.7896-4.643-2.2199-0.515753.382

The row means vary far more than the column means, so what separates the values runs down the rows.

Dimensions and labels
MarginLabelsCount
RowsrangeRf, rangeGf, -madRb, -madGb, medRS2N, medGS2N, -medA_empty, -medA_negative, medA_positive, diffA_pos-neg, -msePTip, -mseFit, …15
Columns10Mm_149.gpr, 10Mm_197.gpr, 11Mm_196.gpr, 11Mm_207.gpr, 11Mm_218.gpr, 6Mm.163.gpr, 6Mm.173.gpr, 6Mm.210.gpr, 6Mm.224.gpr, 6Mm.225.gpr, 6Mm.233.gpr, 7Mm.112.gpr, …16
Columns

This object is 16 columns wide. A matrix carries no per-column schema, so its width is what the catalogue records and there is nothing to list one column at a time. What it holds is described whole instead, summarised over every cell: see Values and Margins above.

Structure fingerprint

5 other datasets carry the same structure fingerprint. That fingerprint is a digest of the column names and their types, and a matrix carries neither, so on one it comes down to the width and the type held: a match is another object of 16 columns holding the same type rather than one with the same columns. The datasets are not listed, because that is not a list of anything this one is related to.

Version history
VersionReleasedSizeChangeStored asConfidence
3.232026-04-2815 × 16Unchangedrda · gzip
version 2 · 2.2 KB
exact
3.222025-10-2915 × 16Unchangedrda · gzip
version 2 · 2.2 KB
exact
3.212025-04-1515 × 16Unchangedrda · gzip
version 2 · 2.2 KB
exact
3.202024-10-2915 × 16Unchangedrda · gzip
version 2 · 2.2 KB
exact
3.192024-04-3015 × 16Unchangedrda · gzip
version 2 · 2.2 KB
exact
3.182023-10-2415 × 16Unchangedrda · gzip
version 2 · 2.2 KB
exact
3.172023-04-2515 × 16Unchangedrda · gzip
version 2 · 2.2 KB
exact
3.162022-11-0115 × 16Unchangedrda · gzip
version 2 · 2.2 KB
exact
3.152022-04-2615 × 16Unchangedrda · gzip
version 2 · 2.2 KB
exact
3.142021-10-2615 × 16Unchangedrda · gzip
version 2 · 2.2 KB
exact
3.132021-05-1915 × 16Unchangedrda · gzip
version 2 · 2.2 KB
exact
3.122020-10-2715 × 16Unchangedrda · gzip
version 2 · 2.2 KB
exact
3.112020-04-2715 × 16Unchangedrda · gzip
version 2 · 2.2 KB
exact
3.102019-10-2915 × 16Unchangedrda · gzip
version 2 · 2.2 KB
exact
3.92019-05-0215 × 16Unchangedrda · gzip
version 2 · 2.2 KB
exact
3.82018-10-3015 × 16Unchangedrda · gzip
version 2 · 2.2 KB
exact
3.72018-04-3015 × 16Unchangedrda · gzip
version 2 · 2.2 KB
exact
3.62017-10-3015 × 16Unchangedrda · gzip
version 2 · 2.2 KB
exact
3.52017-04-2415 × 16Unchangedrda · gzip
version 2 · 2.2 KB
exact
3.42016-10-1715 × 16Unchangedrda · gzip
version 2 · 2.2 KB
exact
3.32016-05-0315 × 16Unchangedrda · gzip
version 2 · 2.2 KB
exact
3.22015-10-1315 × 16Unchangedrda · gzip
version 2 · 2.2 KB
exact
3.12015-04-1615 × 16Unchangedrda · gzip
version 2 · 2.2 KB
exact
3.02014-10-1315 × 16Unchangedrda · gzip
version 2 · 2.2 KB
exact
2.142014-04-1115 × 16Unchangedrda · gzip
version 2 · 2.2 KB
exact
2.132013-10-1415 × 16Unchangedrda · gzip
version 2 · 2.2 KB
exact
2.122013-04-0315 × 16Unchangedrda · gzip
version 2 · 2.2 KB
exact
2.112012-10-0115 × 16Unchangedrda · gzip
version 2 · 2.2 KB
exact
2.102012-03-3015 × 16Unchangedrda · gzip
version 2 · 2.2 KB
exact
2.92011-10-3115 × 16Unchangedrda · gzip
version 2 · 2.2 KB
exact
2.82011-04-1315 × 16Unchangedrda · gzip
version 2 · 2.2 KB
exact
2.72010-10-1815 × 16Unchangedrda · gzip
version 2 · 2.2 KB
exact
2.62010-04-2215 × 16Unchangedrda · gzip
version 2 · 2.2 KB
exact
2.52009-10-2715 × 16Unchangedrda · gzip
version 2 · 2.2 KB
exact
2.42009-04-2015 × 16Unchangedrda · gzip
version 2 · 2.2 KB
exact
2.32008-10-2115 × 16Unchangedrda · gzip
version 2 · 2.2 KB
exact
2.22008-04-3015 × 16Data changed
Dimensions 16 × 16 → 15 × 16 · Distinct 253 → 237 · Value summary
rda · gzip
version 2 · 2.2 KB
exact
2.12007-10-0316 × 16Unchangedrda · none
version 2 · 2.9 KB
exact
2.02007-04-2416 × 16Unchangedrda · none
version 2 · 2.9 KB
exact
1.92006-10-0316 × 16Unchangedrda · none
version 2 · 2.9 KB
exact
1.82006-04-2516 × 16Unchangedrda · none
version 2 · 2.9 KB
exact
1.72005-10-1216 × 16Unchangedrda · none
version 2 · 2.9 KB
exact
1.62005-05-1916 × 16Unchangedrda · none
version 2 · 2.9 KB
exact
1.52004-11-0316 × 16Unchangedrda · none
version 2 · 2.9 KB
exact
1.42004-08-2316 × 16–rda · none
version 2 · 2.9 KB
exact

Dimensions is the row and column count. Distinct is how many different values were counted in the object. Value summary is the six-number summary of the values and their spread.

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