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kristensen

Interactome of HeLa cells

Bundled with PrInCE · exported, loads via data()

Class
matrix
Dimensions
1,875 × 48
Missing
61,823
Format
rda · bzip2
version 2 · 149 KB
File
data/kristensen.rda
Fingerprint
cb53cc26
Format documented
Yes
Source
https://www.nature.com/articles/nmeth.2131
About this object
A flat block of values with dimensionsA block of cells sharing every edge, with nothing above the columns and nothing in it: a name here is hung on the whole block rather than on one column.

A single vector with a dim attribute. All elements share one type. R object catalogue

Values

Computed over every cell in the object, reading it as one vector.

numeric
Cells
90,000
Missing
61,823
Min.
3.8454e-5
1st Qu.
0.063712
Median
0.35645
Mean
1.83493
3rd Qu.
2.9158
Max.
266.69
Std. dev
3.49866
Distinct
26,213
Skewness
23.26
Kurtosis
1407
Outliers
1,311 0 low · 1311 high
Longest missing run
47
Margins

The mean of each row, and of each column, summarised. Reading every cell as one vector gives a matrix and its transpose the same answer; these do not.

MarginMin.1st Qu.MedianMean3rd Qu.Max.Std. dev
Rows0.00181171.33832.55793.21834.174875.2243.1394
Columns0.1231.14781.77961.98932.7754.42431.0584

The row means and the column means vary by a similar amount, so neither margin carries the structure on its own.

Dimensions and labels
MarginLabelsCount
RowsA0AVD3, A0AVT1-1, A0MZ66-3, A0PJ72, A1L0V1, A2A274, A2ICT2, A2RTX5-1, A4D0Z6, A4D110, A4D1G5, A4D218, …1,875
ColumnsSEC_1, SEC_2, SEC_3, SEC_4, SEC_5, SEC_6, SEC_7, SEC_8, SEC_9, SEC_10, SEC_11, SEC_12, …48
Columns

This object is 48 columns wide. A matrix carries no per-column schema, so its width is what the catalogue records and there is nothing to list one column at a time. What it holds is described whole instead, summarised over every cell: see Values and Margins above.

Structure fingerprint

1 other dataset carries the same structure fingerprint. That fingerprint is a digest of the column names and their types, and a matrix carries neither, so on one it comes down to the width and the type held: a match is another object of 48 columns holding the same type rather than one with the same columns. The datasets are not listed, because that is not a list of anything this one is related to.

Version history
VersionReleasedSizeChangeStored asConfidence
3.232026-04-281,875 × 48Unchangedrda · bzip2
version 2 · 149 KB
exact
3.222025-10-291,875 × 48Unchangedrda · bzip2
version 2 · 149 KB
exact
3.212025-04-151,875 × 48Unchangedrda · bzip2
version 2 · 149 KB
exact
3.202024-10-291,875 × 48Unchangedrda · bzip2
version 2 · 149 KB
exact
3.192024-04-301,875 × 48Unchangedrda · bzip2
version 2 · 149 KB
exact
3.182023-10-241,875 × 48Unchangedrda · bzip2
version 2 · 149 KB
exact
3.172023-04-251,875 × 48Unchangedrda · bzip2
version 2 · 149 KB
exact
3.162022-11-011,875 × 48Unchangedrda · bzip2
version 2 · 149 KB
exact
3.152022-04-261,875 × 48Unchangedrda · bzip2
version 2 · 149 KB
exact
3.142021-10-261,875 × 48Unchangedrda · bzip2
version 2 · 149 KB
exact
3.132021-05-191,875 × 48Unchangedrda · bzip2
version 2 · 149 KB
exact
3.122020-10-271,875 × 48Unchangedrda · bzip2
version 2 · 149 KB
exact
3.112020-04-271,875 × 48Unchangedrda · bzip2
version 2 · 149 KB
exact
3.102019-10-291,875 × 48Unchangedrda · bzip2
version 2 · 149 KB
exact
3.92019-09-271,875 × 48–rda · bzip2
version 2 · 149 KB
exact

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