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benchmark_3

Summary results from some benchmarks reported in the vignette.

Bundled with OncoSimulR · exported, loads via data()

Class
data.frame
Dimensions
14 × 38
Missing
0
Format
rda · gzip
version 2 · 2.9 KB
File
data/benchmark_3.RData
Fingerprint
8f1dadd5
Format documented
Yes
Source
Source not stated
About this object
A table with named columnsA bordered table: a header band ruled off from the body with an empty slot over each column where its name goes, and rows of cells under it that share every edge. Nothing is in any of them.

Equal-length columns presented as a table, R's standard rectangular format. R object catalogue

Declared attributes
Other attributes

Read by name, kind and length, with the value where it is short enough to show. No rule here knows what any of them means.

AttributeHoldsLength
system_summarylist5
Columns
Column
Type
Distinct
Missing
Summary
NumClones.Min.
numeric
12
0
2 – 706mean 98.14
Min.
2
1st Qu.
4
Median
12
Mean
98.1429
3rd Qu.
66.5
Max.
706
Std. dev
200.27
Skewness
2.129
Kurtosis
3.353
Outliers
20 low · 2 high
NumClones.1st.Qu.
numeric
14
0
3 – 1053.75mean 168.2
Min.
3
1st Qu.
8.5
Median
45.375
Mean
168.196
3rd Qu.
139.688
Max.
1053.75
Std. dev
295.95
Skewness
2.004
Kurtosis
2.996
Outliers
20 low · 2 high
NumClones.Median
numeric
13
0
4 – 1140mean 197.4
Min.
4
1st Qu.
11
Median
65.5
Mean
197.429
3rd Qu.
181.25
Max.
1140
Std. dev
324.234
Skewness
1.86
Kurtosis
2.43
Outliers
20 low · 2 high
NumClones.Mean
numeric
14
0
4.42 – 1189.6mean 210.3
Min.
4.42
1st Qu.
10.7975
Median
71.485
Mean
210.263
3rd Qu.
195.132
Max.
1189.6
Std. dev
338.565
Skewness
1.809
Kurtosis
2.289
Outliers
20 low · 2 high
NumClones.3rd.Qu.
numeric
14
0
5 – 1288.5mean 239.3
Min.
5
1st Qu.
12.4375
Median
93
Mean
239.321
3rd Qu.
231.25
Max.
1288.5
Std. dev
370.983
Skewness
1.713
Kurtosis
1.907
Outliers
20 low · 2 high
NumClones.Max.
numeric
14
0
8 – 3207mean 561.8
Min.
8
1st Qu.
19.5
Median
171.5
Mean
561.786
3rd Qu.
622.75
Max.
3207
Std. dev
926.213
Skewness
1.778
Kurtosis
2.108
Outliers
20 low · 2 high
NumIter.Min.
numeric
14
0
45 – 39724mean 4011
Min.
45
1st Qu.
212.5
Median
799
Mean
4010.71
3rd Qu.
1610.5
Max.
39724
Std. dev
10416.9
Skewness
2.851
Kurtosis
6.878
Outliers
20 low · 2 high
NumIter.1st.Qu.
numeric
14
0
379.25 – 266362mean 2.555e+4
Min.
379.25
1st Qu.
747
Median
2401
Mean
25545.6
3rd Qu.
8237
Max.
266362
Std. dev
70418.4
Skewness
2.829
Kurtosis
6.78
Outliers
20 low · 2 high
NumIter.Median
numeric
14
0
490 – 398298mean 4.062e+4
Min.
490
1st Qu.
1092.5
Median
3262.5
Mean
40618
3rd Qu.
11401.9
Max.
398298
Std. dev
106384
Skewness
2.692
Kurtosis
6.147
Outliers
30 low · 3 high
NumIter.Mean
numeric
14
0
528.93 – 424488mean 4.745e+4
Min.
528.93
1st Qu.
1172.34
Median
3356.82
Mean
47452
3rd Qu.
12830.8
Max.
424488
Std. dev
116065
Skewness
2.462
Kurtosis
5.024
Outliers
30 low · 3 high
NumIter.3rd.Qu.
numeric
14
0
667.25 – 582510mean 6.252e+4
Min.
667.25
1st Qu.
1522.56
Median
3854.5
Mean
62517.9
3rd Qu.
15971.3
Max.
582510
Std. dev
157306
Skewness
2.57
Kurtosis
5.566
Outliers
30 low · 3 high
NumIter.Max.
numeric
14
0
1225 – 984196mean 1.568e+5
Min.
1225
1st Qu.
3157.75
Median
8700
Mean
156842
3rd Qu.
32451.2
Max.
984196
Std. dev
346511
Skewness
1.785
Kurtosis
1.359
Outliers
30 low · 3 high
FinalTime.Min.
numeric
14
0
16.025 – 992.9mean 119.3
Min.
16.025
1st Qu.
22
Median
33.5
Mean
119.35
3rd Qu.
70.8688
Max.
992.9
Std. dev
255.754
Skewness
2.813
Kurtosis
6.734
Outliers
30 low · 3 high
FinalTime.1st.Qu.
numeric
14
0
40.875 – 6658.01mean 772.3
Min.
40.875
1st Qu.
65.4875
Median
202.1
Mean
772.252
3rd Qu.
448.688
Max.
6658.01
Std. dev
1736.13
Skewness
2.747
Kurtosis
6.45
Outliers
30 low · 3 high
FinalTime.Median
numeric
14
0
50.75 – 9955.49mean 1225
Min.
50.75
1st Qu.
89.4938
Median
293.531
Mean
1224.68
3rd Qu.
800.462
Max.
9955.49
Std. dev
2614.56
Skewness
2.623
Kurtosis
5.905
Outliers
20 low · 2 high
FinalTime.Mean
numeric
14
0
56.15 – 10610.3mean 1460
Min.
56.15
1st Qu.
93.2412
Median
326.072
Mean
1460.11
3rd Qu.
1010.6
Max.
10610.3
Std. dev
2854.58
Skewness
2.338
Kurtosis
4.606
Outliers
30 low · 3 high
FinalTime.3rd.Qu.
numeric
14
0
66.625 – 14560.1mean 1919
Min.
66.625
1st Qu.
113.463
Median
416.681
Mean
1919.41
3rd Qu.
1414.09
Max.
14560.1
Std. dev
3868.95
Skewness
2.459
Kurtosis
5.179
Outliers
20 low · 2 high
FinalTime.Max.
numeric
14
0
116.325 – 24597.4mean 4871
Min.
116.325
1st Qu.
321.625
Median
809.438
Mean
4870.91
3rd Qu.
3385.68
Max.
24597.4
Std. dev
8508.35
Skewness
1.603
Kurtosis
0.8897
Outliers
30 low · 3 high
TotalPopSize.Min.
numeric
14
0
1407 – 100416mean 5.076e+4
Min.
1407
1st Qu.
1433
Median
50752.5
Mean
50761.2
3rd Qu.
100019
Max.
100416
Std. dev
51184.5
Skewness
0
Kurtosis
-2.138
TotalPopSize.1st.Qu.
numeric
14
0
1452 – 106020mean 5.263e+4
Min.
1452
1st Qu.
1745.81
Median
51819
Mean
52626.2
3rd Qu.
103111
Max.
106020
Std. dev
52754.2
Skewness
0.0016
Kurtosis
-2.135
TotalPopSize.Median
numeric
14
0
1486.5 – 111256mean 5.441e+4
Min.
1486.5
1st Qu.
2133.38
Median
53005
Mean
54407.1
3rd Qu.
105866
Max.
111256
Std. dev
54113.1
Skewness
0.0047
Kurtosis
-2.131
TotalPopSize.Mean
numeric
14
0
1511.91 – 113499mean 5.577e+4
Min.
1511.91
1st Qu.
2400.8
Median
55663.7
Mean
55774.6
3rd Qu.
108207
Max.
113499
Std. dev
54503.3
Skewness
0.0046
Kurtosis
-2.125
TotalPopSize.3rd.Qu.
numeric
14
0
1557.25 – 120355mean 5.745e+4
Min.
1557.25
1st Qu.
2685.94
Median
55538.6
Mean
57446.8
3rd Qu.
110798
Max.
120355
Std. dev
56353.4
Skewness
0.0127
Kurtosis
-2.117
TotalPopSize.Max.
numeric
14
0
1732 – 265183mean 9.063e+4
Min.
1732
1st Qu.
7751.25
Median
110422
Mean
90632.3
3rd Qu.
135158
Max.
265183
Std. dev
80871.8
Skewness
0.4103
Kurtosis
-0.8906
Attempts.Min.
numeric
1
0
1
Attempts.1st.Qu.
numeric
2
0
1 – 2mean 1.071
Min.
1
1st Qu.
1
Median
1
Mean
1.0714
3rd Qu.
1
Max.
2
Std. dev
0.2673
Skewness
2.978
Kurtosis
7.413
Order
descending
Attempts.Median
numeric
3
0
1 – 4mean 1.357
Min.
1
1st Qu.
1
Median
1
Mean
1.3571
3rd Qu.
1
Max.
4
Std. dev
0.8419
Skewness
2.213
Kurtosis
4.01
Attempts.Mean
numeric
8
0
1 – 7.29mean 1.736
Min.
1
1st Qu.
1
Median
1.025
Mean
1.7357
3rd Qu.
1.2875
Max.
7.29
Std. dev
1.7073
Skewness
2.436
Kurtosis
5.04
Outliers
30 low · 3 high
Attempts.3rd.Qu.
numeric
5
0
1 – 11mean 2.089
Min.
1
1st Qu.
1
Median
1
Mean
2.0893
3rd Qu.
1.1875
Max.
11
Std. dev
2.7238
Skewness
2.48
Kurtosis
5.218
Outliers
30 low · 3 high
Attempts.Max.
numeric
7
0
1 – 42mean 5.857
Min.
1
1st Qu.
1
Median
1.5
Mean
5.8571
3rd Qu.
4.5
Max.
42
Std. dev
10.9324
Skewness
2.541
Kurtosis
5.56
Outliers
30 low · 3 high
size
numeric
14
0
6081656 – 2012622488mean 2.855e+8
Min.
6081656
1st Qu.
33493824
Median
52673804
Mean
2.85527e+8
3rd Qu.
188751554
Max.
2012622488
Std. dev
5.43845e+8
Skewness
2.268
Kurtosis
4.328
Outliers
30 low · 3 high
time
numeric
14
0
0.264 – 40.727mean 6.587
Min.
0.264
1st Qu.
1.168
Median
2.7675
Mean
6.5871
3rd Qu.
5.4283
Max.
40.727
Std. dev
10.8196
Skewness
2.235
Kurtosis
4.176
Outliers
20 low · 2 high
Numindiv
integer
1
0
100
time_per_simul
numeric
14
0
0.0026 – 0.4073mean 0.0659
Min.
0.0026
1st Qu.
0.0117
Median
0.0277
Mean
0.0659
3rd Qu.
0.0543
Max.
0.4073
Std. dev
0.1082
Skewness
2.235
Kurtosis
4.176
Outliers
20 low · 2 high
size_mb_per_simul
numeric
14
0
0.058 – 19.1939mean 2.723
Min.
0.058
1st Qu.
0.3194
Median
0.5023
Mean
2.723
3rd Qu.
1.8001
Max.
19.1939
Std. dev
5.1865
Skewness
2.268
Kurtosis
4.328
Outliers
30 low · 3 high
name
character
14
0
7 – 12 characters
Model
character
2
0
3 – 4 characters
fitness
character
7
0
3 – 7 characters
Same structure in 1 other dataset

These datasets share the same columns and types but hold different data.

OncoSimulRbenchmark_2
Version history
VersionReleasedSizeChangeStored asConfidence
3.232026-04-2814 × 38Unchangedrda · gzip
version 2 · 2.9 KB
exact
3.222025-10-2914 × 38Unchangedrda · gzip
version 2 · 2.9 KB
exact
3.212025-04-1514 × 38Unchangedrda · gzip
version 2 · 2.9 KB
exact
3.202024-10-2914 × 38Unchangedrda · gzip
version 2 · 2.9 KB
exact
3.192024-10-0914 × 38Unchangedrda · gzip
version 2 · 2.9 KB
exact
3.182023-10-2414 × 38Unchangedrda · gzip
version 2 · 2.9 KB
exact
3.172023-04-2514 × 38Unchangedrda · gzip
version 2 · 2.9 KB
exact
3.162023-02-2014 × 38Unchangedrda · gzip
version 2 · 2.9 KB
exact
3.152022-04-2614 × 38Unchangedrda · gzip
version 2 · 2.9 KB
exact
3.142021-10-2614 × 38Unchangedrda · gzip
version 2 · 2.9 KB
exact
3.132021-05-1914 × 38Unchangedrda · gzip
version 2 · 2.9 KB
exact
3.122020-10-2714 × 38Unchangedrda · gzip
version 2 · 2.9 KB
exact
3.112020-04-2714 × 38Unchangedrda · gzip
version 2 · 2.9 KB
exact
3.102020-04-1014 × 38Unchangedrda · gzip
version 2 · 2.9 KB
exact
3.92019-05-0214 × 38Unchangedrda · gzip
version 2 · 2.9 KB
exact
3.82018-10-3014 × 38Unchangedrda · gzip
version 2 · 2.9 KB
exact
3.72018-04-3014 × 38Unchangedrda · gzip
version 2 · 2.9 KB
exact
3.62017-10-3014 × 38Unchangedrda · gzip
version 2 · 2.9 KB
exact
3.52017-04-2414 × 38–rda · gzip
version 2 · 2.9 KB
exact

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