benchmark_2

Summary results from some benchmarks reported in the vignette.

Bundled with OncoSimulR · exported, loads via data()

Class

data.frame

Dimensions

14 × 38

Missing

Format

rda · gzip

version 2 · 2.8 KB

File

data/benchmark_2.RData

Fingerprint

3c771eb3

Format documented

Yes

Source

Source not stated

About this object

Equal-length columns presented as a table, R's standard rectangular format. R object catalogue

Declared attributes

Other attributes

Read by name, kind and length, with the value where it is short enough to show. No rule here knows what any of them means.

Attribute	Holds	Length
system_summary	list	5

Columns

Column

Type

Distinct

Missing

Summary

NumClones.Min.

numeric

1 – 3839mean 289.7

Min.

1st Qu.

Median

8.5

Mean

289.714

3rd Qu.

26.75

Max.

3839

Std. dev

1021.8

Skewness

2.976

Kurtosis

7.404

Outliers

20 low · 2 high

NumClones.1st.Qu.

numeric

1 – 6032.5mean 737.3

Min.

1st Qu.

4.25

Median

49.375

Mean

737.321

3rd Qu.

195.625

Max.

6032.5

Std. dev

1715.62

Skewness

2.213

Kurtosis

3.717

Outliers

30 low · 3 high

NumClones.Median

numeric

3 – 7088mean 868.4

Min.

1st Qu.

6.5

Median

Mean

868.357

3rd Qu.

301.875

Max.

7088

Std. dev

1997.75

Skewness

2.247

Kurtosis

3.909

Outliers

30 low · 3 high

NumClones.Mean

numeric

3.74 – 7083.3mean 877

Min.

3.74

1st Qu.

8.135

Median

75.595

Mean

876.956

3rd Qu.

349.738

Max.

7083.3

Std. dev

1997.54

Skewness

2.237

Kurtosis

3.862

Outliers

20 low · 2 high

NumClones.3rd.Qu.

numeric

5 – 8068.75mean 1023

Min.

1st Qu.

11.5

Median

95.125

Mean

1022.89

3rd Qu.

405.812

Max.

8068.75

Std. dev

2285.24

Skewness

2.2

Kurtosis

3.686

Outliers

20 low · 2 high

NumClones.Max.

numeric

8 – 10664mean 1797

Min.

1st Qu.

19.5

Median

173.5

Mean

1797.14

3rd Qu.

1436.25

Max.

10664

Std. dev

3225.18

Skewness

1.623

Kurtosis

1.415

Outliers

30 low · 3 high

NumIter.Min.

numeric

107 – 79584mean 8714

Min.

107

1st Qu.

216.75

Median

1052

Mean

8714.43

3rd Qu.

2681.5

Max.

79584

Std. dev

21444.9

Skewness

2.571

Kurtosis

5.56

Outliers

30 low · 3 high

NumIter.1st.Qu.

numeric

473.5 – 200029mean 2.921e+4

Min.

473.5

1st Qu.

1154.31

Median

4088.88

Mean

29207.9

3rd Qu.

9508

Max.

200029

Std. dev

64232.5

Skewness

1.875

Kurtosis

1.776

Outliers

20 low · 2 high

NumIter.Median

numeric

783 – 200060mean 3.381e+4

Min.

783

1st Qu.

1730.5

Median

5301

Mean

33807.6

3rd Qu.

11582.1

Max.

200060

Std. dev

70688.6

Skewness

1.799

Kurtosis

1.395

Outliers

20 low · 2 high

NumIter.Mean

numeric

1200.95 – 191518mean 3.201e+4

Min.

1200.95

1st Qu.

2353.4

Median

5383.1

Mean

32010.7

3rd Qu.

12107.5

Max.

191518

Std. dev

64139.8

Skewness

1.791

Kurtosis

1.416

Outliers

30 low · 3 high

NumIter.3rd.Qu.

numeric

1477.75 – 200068mean 3.621e+4

Min.

1477.75

1st Qu.

2860.94

Median

6176.5

Mean

36206.9

3rd Qu.

14251.4

Max.

200068

Std. dev

70149

Skewness

1.754

Kurtosis

1.282

Outliers

30 low · 3 high

NumIter.Max.

numeric

2583 – 200082mean 46694

Min.

2583

1st Qu.

7915.25

Median

11708.5

Mean

46694

3rd Qu.

27977

Max.

200082

Std. dev

71807.4

Skewness

1.378

Kurtosis

0.1229

Outliers

30 low · 3 high

FinalTime.Min.

numeric

16.025 – 1989.08mean 227.5

Min.

16.025

1st Qu.

32.3438

Median

45.1

Mean

227.509

3rd Qu.

72.8312

Max.

1989.08

Std. dev

530.843

Skewness

2.606

Kurtosis

5.698

Outliers

20 low · 2 high

FinalTime.1st.Qu.

numeric

39.875 – 5000mean 782.1

Min.

39.875

1st Qu.

74.4

Median

151.975

Mean

782.148

3rd Qu.

305.305

Max.

5000

Std. dev

1585.23

Skewness

1.869

Kurtosis

1.767

Outliers

20 low · 2 high

FinalTime.Median

numeric

51.5 – 5000mean 946.7

Min.

51.5

1st Qu.

98.1188

Median

231.537

Mean

946.702

3rd Qu.

572.388

Max.

5000

Std. dev

1729.86

Skewness

1.772

Kurtosis

1.337

Outliers

20 low · 2 high

FinalTime.Mean

numeric

54.42 – 4787.05mean 975.1

Min.

54.42

1st Qu.

108.307

Median

268.941

Mean

975.092

3rd Qu.

858.277

Max.

4787.05

Std. dev

1555.61

Skewness

1.67

Kurtosis

1.147

Outliers

20 low · 2 high

FinalTime.3rd.Qu.

numeric

67.625 – 5000mean 1133

Min.

67.625

1st Qu.

132.025

Median

348.409

Mean

1132.91

3rd Qu.

1166.04

Max.

5000

Std. dev

1695.41

Skewness

1.592

Kurtosis

0.9264

Outliers

20 low · 2 high

FinalTime.Max.

numeric

107.5 – 5000mean 2065

Min.

107.5

1st Qu.

297.531

Median

821.513

Mean

2065.38

3rd Qu.

4229.27

Max.

5000

Std. dev

2085.22

Skewness

0.4317

Kurtosis

-1.732

TotalPopSize.Min.

numeric

0 – 1000260mean 7.212e+4

Min.

1st Qu.

Median

942.5

Mean

72115.6

3rd Qu.

1454.25

Max.

1000260

Std. dev

267139

Skewness

2.978

Kurtosis

7.413

Zeros

Outliers

10 low · 1 high

TotalPopSize.1st.Qu.

numeric

0 – 1126930mean 3.015e+5

Min.

1st Qu.

1028.81

Median

1847.5

Mean

301459

3rd Qu.

752354

Max.

1126930

Std. dev

493248

Skewness

0.8571

Kurtosis

-1.334

Zeros

TotalPopSize.Median

numeric

0 – 1.21757e+6mean 3.959e+5

Min.

1st Qu.

1409.5

Median

2518

Mean

395850

3rd Qu.

1049389

Max.

1.21757e+6

Std. dev

550600

Skewness

0.5534

Kurtosis

-1.781

Zeros

TotalPopSize.Mean

numeric

1143.99 – 1.30919e+6mean 3.818e+5

Min.

1143.99

1st Qu.

2676.82

Median

88911.4

Mean

381780

3rd Qu.

793429

Max.

1.30919e+6

Std. dev

488516

Skewness

0.7113

Kurtosis

-1.262

TotalPopSize.3rd.Qu.

numeric

0 – 1.36265e+6mean 4.983e+5

Min.

1st Qu.

2305.5

Median

6493.12

Mean

498255

3rd Qu.

1.10418e+6

Max.

1.36265e+6

Std. dev

598808

Skewness

0.3074

Kurtosis

-1.97

Zeros

TotalPopSize.Max.

numeric

1695 – 2713200mean 820504

Min.

1695

1st Qu.

9487.5

Median

891455

Mean

820504

3rd Qu.

1.3035e+6

Max.

2713200

Std. dev

853100

Skewness

0.5721

Kurtosis

-0.7724

numeric

numeric

numeric

numeric

numeric

numeric

numeric

6713496 – 11856329816mean 1.17e+9

Min.

6713496

1st Qu.

15915970

Median

64594184

Mean

1.17029e+9

3rd Qu.

263509324

Max.

11856329816

Std. dev

3.17697e+9

Skewness

2.7

Kurtosis

6.163

Outliers

30 low · 3 high

time

numeric

0.166 – 331.394mean 33.95

Min.

0.166

1st Qu.

1.4065

Median

2.721

Mean

33.9546

3rd Qu.

11.4823

Max.

331.394

Std. dev

88.7674

Skewness

2.672

Kurtosis

6.028

Outliers

20 low · 2 high

Numindiv

integer

100

time_per_simul

numeric

0.0017 – 3.3139mean 0.3395

Min.

0.0017

1st Qu.

0.0141

Median

0.0272

Mean

0.3395

3rd Qu.

0.1148

Max.

3.3139

Std. dev

0.8877

Skewness

2.672

Kurtosis

6.028

Outliers

20 low · 2 high

size_mb_per_simul

numeric

0.064 – 113.071mean 11.16

Min.

0.064

1st Qu.

0.1518

Median

0.616

Mean

11.1608

3rd Qu.

2.513

Max.

113.071

Std. dev

30.2979

Skewness

2.7

Kurtosis

6.163

Outliers

30 low · 3 high

name

character

7 – 12 characters

Model

character

3 – 4 characters

fitness

character

3 – 7 characters

Same structure in 1 other dataset

These datasets share the same columns and types but hold different data.

OncoSimulRbenchmark_3

Version history

Version	Released	Size	Change	Stored as	Confidence
3.23	2026-04-28	14 × 38	Unchanged	rda · gzip version 2 · 2.8 KB	exact
3.22	2025-10-29	14 × 38	Unchanged	rda · gzip version 2 · 2.8 KB	exact
3.21	2025-04-15	14 × 38	Unchanged	rda · gzip version 2 · 2.8 KB	exact
3.20	2024-10-29	14 × 38	Unchanged	rda · gzip version 2 · 2.8 KB	exact
3.19	2024-10-09	14 × 38	Unchanged	rda · gzip version 2 · 2.8 KB	exact
3.18	2023-10-24	14 × 38	Unchanged	rda · gzip version 2 · 2.8 KB	exact
3.17	2023-04-25	14 × 38	Unchanged	rda · gzip version 2 · 2.8 KB	exact
3.16	2023-02-20	14 × 38	Unchanged	rda · gzip version 2 · 2.8 KB	exact
3.15	2022-04-26	14 × 38	Unchanged	rda · gzip version 2 · 2.8 KB	exact
3.14	2021-10-26	14 × 38	Unchanged	rda · gzip version 2 · 2.8 KB	exact
3.13	2021-05-19	14 × 38	Unchanged	rda · gzip version 2 · 2.8 KB	exact
3.12	2020-10-27	14 × 38	Unchanged	rda · gzip version 2 · 2.8 KB	exact
3.11	2020-04-27	14 × 38	Unchanged	rda · gzip version 2 · 2.8 KB	exact
3.10	2020-04-10	14 × 38	Unchanged	rda · gzip version 2 · 2.8 KB	exact
3.9	2019-05-02	14 × 38	Unchanged	rda · gzip version 2 · 2.8 KB	exact
3.8	2018-10-30	14 × 38	Unchanged	rda · gzip version 2 · 2.8 KB	exact
3.7	2018-04-30	14 × 38	Unchanged	rda · gzip version 2 · 2.8 KB	exact
3.6	2017-10-30	14 × 38	Unchanged	rda · gzip version 2 · 2.8 KB	exact
3.5	2017-04-24	14 × 38	–	rda · gzip version 2 · 2.8 KB	exact