spectronaut_input

Example Spectronaut evidence file from the output of a label free experiment

Bundled with MSstatsPTM · exported, loads via data()

Class

data.frame

Dimensions

2,683 × 23

Missing

3,718

Format

rda · gzip

version 3 · 107 KB

File

data/spectronaut_input.rda

Fingerprint

b6111d15

Format documented

Yes

Source

Source not stated

About this object

Equal-length columns presented as a table, R's standard rectangular format. R object catalogue

Columns

Column

Type

Distinct

Missing

Summary

character

7

0

3 – 5 characters

character

36

0

36 – 37 characters

integer

6

0

1 – 6mean 3.433

Min.

1

1st Qu.

2

Median

3

Mean

3.4335

3rd Qu.

5

Max.

6

Std. dev

1.6936

Skewness

0.0732

Kurtosis

-1.248

character

10

0

4 – 8 characters

PG.ProteinDescriptions

character

10

0

22 – 50 characters

PG.ProteinGroups

character

10

0

6 characters

PG.ProteinNames

character

10

0

9 – 11 characters

PEP.PeptidePosition

character

27

0

1 – 4 characters

logical

1

0

0 true·2,683 false

character

85

0

15 – 91 characters

EG.PTMAssayCandidateScore

numeric

2,177

472

1 – 101.041·472 NaN

Min.

1

1st Qu.

14.4932

Median

23.5445

Mean

28.8378

3rd Qu.

41.1479

Max.

101.041

Std. dev

18.9734

Skewness

0.9312

Kurtosis

0.4269

Outliers

260 low · 26 high

NaN

472of the missing

Longest gap

5

Trailing

5

EG.PTMAssayProbability

numeric

1,782

472

9.38e-13 – 1·472 NaN

Min.

9.38e-13

1st Qu.

0.0093

Median

0.5523

Mean

0.5179

3rd Qu.

0.9987

Max.

1

Std. dev

0.4462

Skewness

-0.0655

Kurtosis

-1.835

NaN

472of the missing

Longest gap

5

Trailing

5

EG.PTMLocalizationConfidence

numeric

1,615

91

0.25 – 1·91 NaN

Min.

0.25

1st Qu.

0.8503

Median

0.9884

Mean

0.9149

3rd Qu.

1

Max.

1

Std. dev

0.1258

Skewness

-1.777

Kurtosis

2.968

Outliers

128128 low · 0 high

NaN

91of the missing

EG.PTMLocalizationProbabilities

character

1,087

0

13 – 238 characters

EG.NormalizationFactor

numeric

1,934

0

0.2212 – 1.76685e+6mean 5260

Min.

0.2212

1st Qu.

0.3567

Median

0.4341

Mean

5260.06

3rd Qu.

0.6249

Max.

1.76685e+6

Std. dev

84094.7

Skewness

16.71

Kurtosis

289.7

Outliers

3120 low · 312 high

EG.TotalQuantity..Settings.

numeric

2,411

0

893.726 – 356193000000mean 4.02e+8

Min.

893.726

1st Qu.

10824

Median

37037.4

Mean

4.02026e+8

3rd Qu.

75041.3

Max.

356193000000

Std. dev

1.00071e+10

Skewness

29.38

Kurtosis

908.3

Outliers

2720 low · 272 high

character

2

0

1 characters

character

2

0

1 characters

EG.ModifiedSequence

character

71

0

13 – 89 characters

logical

0

2,683

0 true·0 false

Longest missing run

2,683

Leading

2,683

Trailing

2,683

character

1

0

6 characters

F.ExcludedFromQuantification

logical

1

0

0 true·2,683 false

numeric

2,411

0

893.726 – 356193000000mean 4.02e+8

Min.

893.726

1st Qu.

10824

Median

37037.4

Mean

4.02026e+8

3rd Qu.

75041.3

Max.

356193000000

Std. dev

1.00071e+10

Skewness

29.38

Kurtosis

908.3

Outliers

2720 low · 272 high

Version history

Version	Released	Size	Change	Stored as	Confidence
3.23	2026-04-28	2,683 × 23	Unchanged	rda · gzip version 3 · 107 KB	exact
3.22	2025-10-29	2,683 × 23	Unchanged	rda · gzip version 3 · 107 KB	exact
3.21	2025-08-25	2,683 × 23	Unchanged	rda · gzip version 3 · 107 KB	exact
3.20	2024-11-25	2,683 × 23	Unchanged	rda · gzip version 3 · 107 KB	exact
3.19	2024-09-24	2,683 × 23	Unchanged	rda · gzip version 3 · 107 KB	exact
3.18	2024-02-13	2,683 × 23	Unchanged	rda · gzip version 3 · 107 KB	exact
3.17	2023-06-27	2,683 × 23	–	rda · gzip version 3 · 107 KB	exact