fragpipe_input_protein

Output of FragPipe TMT global profiling experiment

Bundled with MSstatsPTM · exported, loads via data()

Class

data.frame

Dimensions

47 × 27

Missing

Format

rda · gzip

version 3 · 4.6 KB

File

data/fragpipe_input_protein.rda

Fingerprint

4499ec81

Format documented

Yes

Source

Source not stated

About this object

Equal-length columns presented as a table, R's standard rectangular format. R object catalogue

Columns

Column

Type

Distinct

Missing

Summary

Spectrum.Name

character

52 characters

Spectrum.File

character

43 characters

Peptide.Sequence

character

8 – 30 characters

Modified.Peptide.Sequence

character

0 – 41 characters·2 blank

Probability

numeric

0.7652 – 1mean 0.9892

Min.

0.7652

1st Qu.

Median

Mean

0.9892

3rd Qu.

Max.

Std. dev

0.0414

Skewness

-4.141

Kurtosis

17.37

Charge

integer

2 – 5mean 2.894

Min.

1st Qu.

Median

Mean

2.8936

3rd Qu.

Max.

Std. dev

0.8401

Skewness

1.056

Kurtosis

0.8995

Outliers

40 low · 4 high

Protein.Start

integer

112 – 2289mean 650.7

Min.

112

1st Qu.

180

Median

428

Mean

650.723

3rd Qu.

927

Max.

2289

Std. dev

629.695

Skewness

1.465

Kurtosis

1.129

Outliers

40 low · 4 high

Protein.End

integer

132 – 2301mean 665.5

Min.

132

1st Qu.

189

Median

435

Mean

665.511

3rd Qu.

947

Max.

2301

Std. dev

629.391

Skewness

1.467

Kurtosis

1.118

Outliers

40 low · 4 high

Gene

character

4 – 6 characters

Mapped.Genes

character

0 – 5 characters·44 blank

Protein

character

20 – 21 characters

Protein.ID

character

6 characters

Mapped.Proteins

character

0 – 21 characters·44 blank

Protein.Description

character

8 – 45 characters

Is.Unique

character

4 – 5 characters

Purity

numeric

0 – 1mean 0.8757

Min.

1st Qu.

0.835

Median

Mean

0.8757

3rd Qu.

Max.

Std. dev

0.2454

Skewness

-2.215

Kurtosis

4.553

Zeros

Outliers

55 low · 0 high

Intensity

numeric

0 – 1203790848mean 9.731e+7

Min.

1st Qu.

21806226

Median

43080992

Mean

9.73146e+7

3rd Qu.

107129632

Max.

1203790848

Std. dev

1.84381e+8

Skewness

4.673

Kurtosis

24.77

Zeros

Outliers

40 low · 4 high

Channel.126

numeric

0 – 1.32114e+6mean 1.973e+5

Min.

1st Qu.

71827.3

Median

115804

Mean

197288

3rd Qu.

186779

Max.

1.32114e+6

Std. dev

255443

Skewness

2.615

Kurtosis

7.124

Zeros

Outliers

60 low · 6 high

Channel.127N

numeric

0 – 1.28345e+6mean 1.693e+5

Min.

1st Qu.

61773.8

Median

115424

Mean

169320

3rd Qu.

189752

Max.

1.28345e+6

Std. dev

223808

Skewness

3.327

Kurtosis

12.47

Zeros

Outliers

40 low · 4 high

Channel.127C

numeric

0 – 2.86208e+6mean 2.787e+5

Min.

1st Qu.

80656.1

Median

118296

Mean

278745

3rd Qu.

227605

Max.

2.86208e+6

Std. dev

474666

Skewness

3.841

Kurtosis

16.73

Zeros

Outliers

70 low · 7 high

Channel.128N

numeric

0 – 1.51353e+6mean 2.586e+5

Min.

1st Qu.

82633.6

Median

140027

Mean

258636

3rd Qu.

277232

Max.

1.51353e+6

Std. dev

320546

Skewness

2.281

Kurtosis

5.068

Zeros

Outliers

60 low · 6 high

Channel.128C

numeric

0 – 1.83962e+6mean 3.666e+5

Min.

1st Qu.

100573

Median

216559

Mean

366563

3rd Qu.

324319

Max.

1.83962e+6

Std. dev

441461

Skewness

1.995

Kurtosis

3.306

Zeros

Outliers

70 low · 7 high

Channel.129N

numeric

0 – 1.54361e+6mean 2.672e+5

Min.

1st Qu.

105347

Median

186537

Mean

267169

3rd Qu.

307346

Max.

1.54361e+6

Std. dev

295696

Skewness

2.53

Kurtosis

7.138

Zeros

Outliers

40 low · 4 high

Channel.129C

numeric

0 – 1.54253e+6mean 2.459e+5

Min.

1st Qu.

95784.6

Median

143261

Mean

245878

3rd Qu.

252192

Max.

1.54253e+6

Std. dev

303816

Skewness

2.55

Kurtosis

6.753

Zeros

Outliers

50 low · 5 high

Channel.130N

numeric

0 – 1.44198e+6mean 2.549e+5

Min.

1st Qu.

104232

Median

152195

Mean

254905

3rd Qu.

313571

Max.

1.44198e+6

Std. dev

282203

Skewness

2.307

Kurtosis

5.793

Zeros

Outliers

40 low · 4 high

Channel.130C

numeric

0 – 1.23807e+6mean 1.859e+5

Min.

1st Qu.

69310.2

Median

120696

Mean

185948

3rd Qu.

214981

Max.

1.23807e+6

Std. dev

218996

Skewness

2.871

Kurtosis

9.844

Zeros

Outliers

30 low · 3 high

Channel.131N

numeric

0 – 1.37393e+6mean 2.002e+5

Min.

1st Qu.

89099.9

Median

128020

Mean

200163

3rd Qu.

221389

Max.

1.37393e+6

Std. dev

241339

Skewness

2.989

Kurtosis

10.48

Zeros

Outliers

60 low · 6 high

Version history

Version	Released	Size	Change	Stored as	Confidence
3.23	2026-04-28	47 × 27	Unchanged	rda · gzip version 3 · 4.6 KB	exact
3.22	2025-10-29	47 × 27	Unchanged	rda · gzip version 3 · 4.6 KB	exact
3.21	2025-08-25	47 × 27	Unchanged	rda · gzip version 3 · 4.6 KB	exact
3.20	2024-11-25	47 × 27	Unchanged	rda · gzip version 3 · 4.6 KB	exact
3.19	2024-09-24	47 × 27	Unchanged	rda · gzip version 3 · 4.6 KB	exact
3.18	2024-02-13	47 × 27	Unchanged	rda · gzip version 3 · 4.6 KB	exact
3.17	2023-06-27	47 × 27	–	rda · gzip version 3 · 4.6 KB	exact