muscat_res
`muscat_res`
Bundled with DeeDeeExperiment · exported, loads via data()
Class
list
Elements
4
Missing
0
Format
rda · xz
version 3 · 49 KB
File
data/muscat_pbDS_res.RData
Fingerprint
a8efb9ee
Format documented
Yes
Source
Source not stated
About this object
R's general-purpose container. Elements can be any type and any size. R object catalogue
Structure
Distinct
4
Nesting depth
4
Element length
1 – 10
Total length
17
Nested rows
133
Nested columns
9
Nested schema
varies between elements
Elements
Element
Type
Distinct
Missing
Summary
tablelist10list·47 rows nested·9 cols
Element class
list
Element length
3 – 3
Total length
3
Nesting depth
3
Nested rows
47
What is inside it
Element
Type
Distinct
Missing
Summary
stim-ctrllist30data.frame·47 rows nested·9 cols
Element class
data.frame
Element length
9 – 9
Total length
27
Nesting depth
2
Nested rows
47
Every nested table has these 9 columns
- gene
- cluster_id
- logFC
- logCPM
- F
- p_val
- p_adj.loc
- p_adj.glb
- contrast
Every nested table has these 9 columns
- gene
- cluster_id
- logFC
- logCPM
- F
- p_val
- p_adj.loc
- p_adj.glb
- contrast
datalist30DGEList·43 rows nested·3 cols
Element class
DGEList
Element length
11 – 11
Total length
33
Nesting depth
3
Nested rows
43
What is inside it
Element
Type
Distinct
Missing
Summary
B cellslist110nested·16 rows nested·3 cols
Element length
1 – 432
Total length
553
Nesting depth
2
Nested rows
16
Every nested table has these 3 columns
- group
- lib.size
- norm.factors
Dendritic cellslist90nested·11 rows nested·3 cols
Element length
1 – 44
Total length
86
Nesting depth
2
Nested rows
11
Every nested table has these 3 columns
- group
- lib.size
- norm.factors
NK cellslist90nested·16 rows nested·3 cols
Element length
1 – 256
Total length
344
Nesting depth
2
Nested rows
16
Every nested table has these 3 columns
- group
- lib.size
- norm.factors
Every nested table has these 3 columns
- group
- lib.size
- norm.factors
fitlist30DGEGLM·43 rows nested·3 cols
Element class
DGEGLM
Element length
20 – 20
Total length
60
Nesting depth
3
Nested rows
43
What is inside it
Element
Type
Distinct
Missing
Summary
B cellslist200nested·16 rows nested·3 cols
Element length
1 – 432
Total length
1,218
Nesting depth
2
Nested rows
16
Every nested table has these 3 columns
- group
- lib.size
- norm.factors
Dendritic cellslist200nested·11 rows nested·3 cols
Element length
1 – 44
Total length
174
Nesting depth
2
Nested rows
11
Every nested table has these 3 columns
- group
- lib.size
- norm.factors
NK cellslist200nested·16 rows nested·3 cols
Element length
1 – 256
Total length
745
Nesting depth
2
Nested rows
16
Every nested table has these 3 columns
- group
- lib.size
- norm.factors
Every nested table has these 3 columns
- group
- lib.size
- norm.factors
argslist100nested
Element length
0 – 32
Total length
46
What is inside it
Element
Type
Distinct
Missing
Summary
method
character
5
0
2 – 11 characters
designnumeric200 – 1·16 × 2 matrixmean 0.5
Min.
0
1st Qu.
0
Median
0.5
Mean
0.5
3rd Qu.
1
Max.
1
Std. dev
0.508
Skewness
8.257e-16
Kurtosis
-2.062
Zeros
16
contrastnumeric20-1 – 1·2 × 1 matrixmean 0
Min.
-1
1st Qu.
-0.5
Median
0
Mean
0
3rd Qu.
0.5
Max.
1
Std. dev
1.4142
Order
ascending
min_cells
numeric
1
0
10
filter
character
4
0
4 – 7 characters
treat
logical
1
0
0 true·1 false
verbose
logical
1
0
1 true·0 false
The nested tables do not share one set of columns, so there is no single schema to show.