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trainingData1

Gene expression profiling from cell line perturbation experiments (training dataset)

Bundled with ASSIGN · exported, loads via data()

Class
data.frame
Dimensions
1,000 × 55
Missing
0
Format
rda · gzip
version 2 · 418 KB
File
data/trainingData1.rda
Fingerprint
7b767b8d
Format documented
Yes
Source
Bild et al. (2006) Oncogenic pathway signatures in human cancers as a guide to targeted therapies. Nature, 439, 353-357.
About this object
A table with named columnsA bordered table: a header band ruled off from the body with an empty slot over each column where its name goes, and rows of cells under it that share every edge. Nothing is in any of them.

Equal-length columns presented as a table, R's standard rectangular format. R object catalogue

Declared attributes
Row names
Yes
Columns
Column
Type
Distinct
Missing
Summary
Control_1
numeric
1,000
0
-0.5764 – 5.0051mean 1.363
Min.
-0.5764
1st Qu.
0.6046
Median
1.316
Mean
1.3629
3rd Qu.
1.9171
Max.
5.0051
Std. dev
1.0349
Skewness
0.8376
Kurtosis
1.073
Outliers
270 low · 27 high
Control_2
numeric
1,000
0
-0.6108 – 5.1799mean 1.284
Min.
-0.6108
1st Qu.
0.5398
Median
1.1745
Mean
1.2844
3rd Qu.
1.7519
Max.
5.1799
Std. dev
1.0429
Skewness
1.104
Kurtosis
1.722
Outliers
410 low · 41 high
Control_3
numeric
1,000
0
-0.5529 – 4.7955mean 1.393
Min.
-0.5529
1st Qu.
0.6679
Median
1.3226
Mean
1.3932
3rd Qu.
1.8822
Max.
4.7955
Std. dev
1.0325
Skewness
0.7743
Kurtosis
0.7983
Outliers
370 low · 37 high
Control_4
numeric
1,000
0
-0.5349 – 5.1865mean 1.394
Min.
-0.5349
1st Qu.
0.6014
Median
1.281
Mean
1.3941
3rd Qu.
1.9338
Max.
5.1865
Std. dev
1.0921
Skewness
0.9063
Kurtosis
0.981
Outliers
350 low · 35 high
Control_5
numeric
1,000
0
-0.5666 – 5.4977mean 1.383
Min.
-0.5666
1st Qu.
0.5605
Median
1.234
Mean
1.3832
3rd Qu.
1.8898
Max.
5.4977
Std. dev
1.1534
Skewness
1.083
Kurtosis
1.31
Outliers
430 low · 43 high
Control_6
numeric
1,000
0
-0.5188 – 5.1565mean 1.402
Min.
-0.5188
1st Qu.
0.6162
Median
1.3235
Mean
1.4016
3rd Qu.
1.9212
Max.
5.1565
Std. dev
1.0952
Skewness
0.9092
Kurtosis
1.094
Outliers
380 low · 38 high
Control_7
numeric
1,000
0
-0.638 – 5.6871mean 1.409
Min.
-0.638
1st Qu.
0.5485
Median
1.2826
Mean
1.4094
3rd Qu.
1.9619
Max.
5.6871
Std. dev
1.1605
Skewness
1.007
Kurtosis
1.259
Outliers
340 low · 34 high
Control_8
numeric
1,000
0
-0.5452 – 5.0872mean 1.365
Min.
-0.5452
1st Qu.
0.5961
Median
1.2678
Mean
1.3655
3rd Qu.
1.902
Max.
5.0872
Std. dev
1.0732
Skewness
0.8986
Kurtosis
1.013
Outliers
330 low · 33 high
Control_9
numeric
1,000
0
-0.5169 – 5.2763mean 1.467
Min.
-0.5169
1st Qu.
0.6351
Median
1.3525
Mean
1.4666
3rd Qu.
2.0484
Max.
5.2763
Std. dev
1.1376
Skewness
0.8235
Kurtosis
0.7103
Outliers
350 low · 35 high
Control_10
numeric
1,000
0
-0.5271 – 5.1266mean 1.308
Min.
-0.5271
1st Qu.
0.5704
Median
1.1934
Mean
1.3083
3rd Qu.
1.8078
Max.
5.1266
Std. dev
1.0442
Skewness
1.03
Kurtosis
1.338
Outliers
380 low · 38 high
BCat_1
numeric
1,000
0
-0.6392 – 6.2843mean 1.215
Min.
-0.6392
1st Qu.
0.39
Median
0.8786
Mean
1.2154
3rd Qu.
1.6142
Max.
6.2843
Std. dev
1.2487
Skewness
1.582
Kurtosis
2.543
Outliers
720 low · 72 high
BCat_2
numeric
1,000
0
-0.647 – 6.2943mean 1.268
Min.
-0.647
1st Qu.
0.4578
Median
0.9909
Mean
1.2677
3rd Qu.
1.6597
Max.
6.2943
Std. dev
1.2256
Skewness
1.504
Kurtosis
2.438
Outliers
730 low · 73 high
Bcat_3
numeric
1,000
0
-0.7889 – 6.6506mean 1.302
Min.
-0.7889
1st Qu.
0.4348
Median
0.9988
Mean
1.3024
3rd Qu.
1.7544
Max.
6.6506
Std. dev
1.2891
Skewness
1.532
Kurtosis
2.565
Outliers
680 low · 68 high
BCat_4
numeric
1,000
0
-0.7325 – 7.1086mean 1.327
Min.
-0.7325
1st Qu.
0.4018
Median
0.9618
Mean
1.3272
3rd Qu.
1.7526
Max.
7.1086
Std. dev
1.3816
Skewness
1.54
Kurtosis
2.317
Outliers
790 low · 79 high
BCat_5
numeric
1,000
0
-0.7769 – 5.435mean 1.289
Min.
-0.7769
1st Qu.
0.5494
Median
1.0927
Mean
1.2888
3rd Qu.
1.7769
Max.
5.435
Std. dev
1.1094
Skewness
1.199
Kurtosis
1.704
Outliers
530 low · 53 high
BCat_6
numeric
1,000
0
-0.7806 – 5.5432mean 1.315
Min.
-0.7806
1st Qu.
0.543
Median
1.1298
Mean
1.3153
3rd Qu.
1.798
Max.
5.5432
Std. dev
1.1429
Skewness
1.133
Kurtosis
1.452
Outliers
490 low · 49 high
BCat_7
numeric
1,000
0
-0.9217 – 5.6264mean 1.168
Min.
-0.9217
1st Qu.
0.4389
Median
0.9511
Mean
1.1683
3rd Qu.
1.5892
Max.
5.6264
Std. dev
1.1088
Skewness
1.423
Kurtosis
2.444
Outliers
620 low · 62 high
BCat_8
numeric
1,000
0
-0.6586 – 4.9287mean 1.153
Min.
-0.6586
1st Qu.
0.5119
Median
0.9945
Mean
1.1525
3rd Qu.
1.56
Max.
4.9287
Std. dev
0.9821
Skewness
1.158
Kurtosis
1.731
Outliers
510 low · 51 high
BCat_9
numeric
1,000
0
-0.6594 – 5.5851mean 1.264
Min.
-0.6594
1st Qu.
0.5214
Median
1.095
Mean
1.2636
3rd Qu.
1.711
Max.
5.5851
Std. dev
1.1023
Skewness
1.244
Kurtosis
1.835
Outliers
600 low · 60 high
E2F3_1
numeric
1,000
0
-0.7306 – 6.0631mean 1.364
Min.
-0.7306
1st Qu.
0.5622
Median
1.1165
Mean
1.3638
3rd Qu.
1.8398
Max.
6.0631
Std. dev
1.2261
Skewness
1.296
Kurtosis
1.849
Outliers
590 low · 59 high
E2F3_2
numeric
1,000
0
-0.5787 – 4.6162mean 1.364
Min.
-0.5787
1st Qu.
0.6608
Median
1.2843
Mean
1.3641
3rd Qu.
1.9039
Max.
4.6162
Std. dev
0.9945
Skewness
0.6818
Kurtosis
0.5263
Outliers
290 low · 29 high
E2F3_3
numeric
1,000
0
-0.6252 – 5.0433mean 1.333
Min.
-0.6252
1st Qu.
0.6445
Median
1.184
Mean
1.3328
3rd Qu.
1.8481
Max.
5.0433
Std. dev
1.0506
Skewness
1.03
Kurtosis
1.354
Outliers
440 low · 44 high
E2F3_4
numeric
1,000
0
-0.628 – 5.8172mean 1.277
Min.
-0.628
1st Qu.
0.5656
Median
1.0536
Mean
1.277
3rd Qu.
1.6975
Max.
5.8172
Std. dev
1.1441
Skewness
1.4
Kurtosis
2.317
Outliers
690 low · 69 high
E2F3_5
numeric
1,000
0
-0.6546 – 5.3769mean 1.294
Min.
-0.6546
1st Qu.
0.5698
Median
1.1203
Mean
1.2937
3rd Qu.
1.7618
Max.
5.3769
Std. dev
1.0984
Skewness
1.204
Kurtosis
1.757
Outliers
530 low · 53 high
E2F3_6
numeric
1,000
0
-0.6682 – 5.209mean 1.347
Min.
-0.6682
1st Qu.
0.6391
Median
1.1953
Mean
1.347
3rd Qu.
1.8203
Max.
5.209
Std. dev
1.0837
Skewness
1.076
Kurtosis
1.385
Outliers
530 low · 53 high
E2F3_7
numeric
1,000
0
-0.6248 – 6.1378mean 1.44
Min.
-0.6248
1st Qu.
0.6231
Median
1.2456
Mean
1.4404
3rd Qu.
1.931
Max.
6.1378
Std. dev
1.2375
Skewness
1.213
Kurtosis
1.622
Outliers
570 low · 57 high
E2F3_8
numeric
1,000
0
-0.6693 – 4.4634mean 1.208
Min.
-0.6693
1st Qu.
0.5802
Median
1.1013
Mean
1.2085
3rd Qu.
1.6585
Max.
4.4634
Std. dev
0.9401
Skewness
0.8761
Kurtosis
1.109
Outliers
420 low · 42 high
E2F3_9
numeric
1,000
0
-0.6128 – 4.8976mean 1.314
Min.
-0.6128
1st Qu.
0.6356
Median
1.1528
Mean
1.3144
3rd Qu.
1.7954
Max.
4.8976
Std. dev
1.042
Skewness
1.023
Kurtosis
1.331
Outliers
460 low · 46 high
Myc_1
numeric
1,000
0
-0.9383 – 4.7246mean 1.313
Min.
-0.9383
1st Qu.
0.6004
Median
1.1738
Mean
1.313
3rd Qu.
1.8103
Max.
4.7246
Std. dev
1.0473
Skewness
0.8949
Kurtosis
0.8348
Outliers
430 low · 43 high
Myc_2
numeric
1,000
0
-1.2554 – 4.8529mean 1.24
Min.
-1.2554
1st Qu.
0.4901
Median
1.0793
Mean
1.2396
3rd Qu.
1.7054
Max.
4.8529
Std. dev
1.0466
Skewness
1.022
Kurtosis
1.156
Outliers
440 low · 44 high
Myc_3
numeric
1,000
0
-1.2539 – 4.8267mean 1.312
Min.
-1.2539
1st Qu.
0.5087
Median
1.1813
Mean
1.3119
3rd Qu.
1.8457
Max.
4.8267
Std. dev
1.0697
Skewness
0.8854
Kurtosis
0.7933
Outliers
320 low · 32 high
Myc_4
numeric
1,000
0
-1.1853 – 4.9016mean 1.222
Min.
-1.1853
1st Qu.
0.4728
Median
1.06
Mean
1.2218
3rd Qu.
1.7038
Max.
4.9016
Std. dev
1.043
Skewness
1.099
Kurtosis
1.402
Outliers
450 low · 45 high
Myc_5
numeric
1,000
0
-1.2458 – 4.9798mean 1.322
Min.
-1.2458
1st Qu.
0.5424
Median
1.1827
Mean
1.3222
3rd Qu.
1.8478
Max.
4.9798
Std. dev
1.0872
Skewness
0.9278
Kurtosis
0.873
Outliers
430 low · 43 high
Myc_6
numeric
1,000
0
-1.2533 – 4.985mean 1.354
Min.
-1.2533
1st Qu.
0.5396
Median
1.2039
Mean
1.3537
3rd Qu.
1.933
Max.
4.985
Std. dev
1.1265
Skewness
0.9233
Kurtosis
0.8159
Outliers
370 low · 37 high
Myc_7
numeric
1,000
0
-1.235 – 5.5346mean 0.9908
Min.
-1.235
1st Qu.
0.277
Median
0.7343
Mean
0.9908
3rd Qu.
1.3838
Max.
5.5346
Std. dev
1.0786
Skewness
1.627
Kurtosis
2.965
Outliers
630 low · 63 high
Myc_8
numeric
1,000
0
-1.1833 – 6.603mean 1.196
Min.
-1.1833
1st Qu.
0.2936
Median
0.7985
Mean
1.1963
3rd Qu.
1.6109
Max.
6.603
Std. dev
1.3475
Skewness
1.636
Kurtosis
2.564
Outliers
780 low · 78 high
Myc_9
numeric
1,000
0
-1.2867 – 6.4082mean 1.229
Min.
-1.2867
1st Qu.
0.3766
Median
0.9116
Mean
1.2288
3rd Qu.
1.719
Max.
6.4082
Std. dev
1.2596
Skewness
1.513
Kurtosis
2.373
Outliers
650 low · 65 high
Myc_10
numeric
1,000
0
-1.2187 – 6.1873mean 1.172
Min.
-1.2187
1st Qu.
0.3103
Median
0.8294
Mean
1.1716
3rd Qu.
1.5753
Max.
6.1873
Std. dev
1.2418
Skewness
1.522
Kurtosis
2.295
Outliers
700 low · 70 high
Ras_1
numeric
1,000
0
-1.9396 – 6.0072mean 1.505
Min.
-1.9396
1st Qu.
0.4062
Median
1.1847
Mean
1.5053
3rd Qu.
2.3449
Max.
6.0072
Std. dev
1.4284
Skewness
0.8347
Kurtosis
0.175
Outliers
190 low · 19 high
Ras_2
numeric
1,000
0
-1.7941 – 7.1108mean 1.435
Min.
-1.7941
1st Qu.
0.2804
Median
0.9479
Mean
1.4355
3rd Qu.
2.2112
Max.
7.1108
Std. dev
1.5569
Skewness
1.142
Kurtosis
0.7174
Outliers
350 low · 35 high
Ras_3
numeric
1,000
0
-1.3261 – 7.2835mean 1.503
Min.
-1.3261
1st Qu.
0.2963
Median
1.0349
Mean
1.5032
3rd Qu.
2.2902
Max.
7.2835
Std. dev
1.6056
Skewness
1.133
Kurtosis
0.662
Outliers
360 low · 36 high
Ras_4
numeric
1,000
0
-1.2027 – 7.0445mean 1.506
Min.
-1.2027
1st Qu.
0.3263
Median
1.0836
Mean
1.5055
3rd Qu.
2.249
Max.
7.0445
Std. dev
1.55
Skewness
1.11
Kurtosis
0.6887
Outliers
340 low · 34 high
Ras_5
numeric
1,000
0
-1.5417 – 5.5124mean 1.578
Min.
-1.5417
1st Qu.
0.5103
Median
1.4282
Mean
1.5779
3rd Qu.
2.3928
Max.
5.5124
Std. dev
1.3263
Skewness
0.5482
Kurtosis
-0.1869
Outliers
50 low · 5 high
Ras_6
numeric
1,000
0
-1.0555 – 6.7786mean 1.512
Min.
-1.0555
1st Qu.
0.305
Median
1.0779
Mean
1.5116
3rd Qu.
2.3368
Max.
6.7786
Std. dev
1.5464
Skewness
1.05
Kurtosis
0.5427
Outliers
270 low · 27 high
Ras_7
numeric
1,000
0
-1.5132 – 6.6709mean 1.507
Min.
-1.5132
1st Qu.
0.3248
Median
1.0845
Mean
1.5074
3rd Qu.
2.3072
Max.
6.6709
Std. dev
1.5549
Skewness
1.047
Kurtosis
0.5508
Outliers
310 low · 31 high
Ras_8
numeric
1,000
0
-1.5209 – 6.8072mean 1.414
Min.
-1.5209
1st Qu.
0.2535
Median
0.89
Mean
1.4141
3rd Qu.
2.1894
Max.
6.8072
Std. dev
1.5838
Skewness
1.184
Kurtosis
0.7494
Outliers
380 low · 38 high
Ras_9
numeric
1,000
0
-1.5214 – 6.0618mean 1.311
Min.
-1.5214
1st Qu.
0.2477
Median
0.9783
Mean
1.3109
3rd Qu.
2.0209
Max.
6.0618
Std. dev
1.3682
Skewness
1.039
Kurtosis
0.6457
Outliers
270 low · 27 high
Ras_10
numeric
1,000
0
-1.1654 – 7.2204mean 1.489
Min.
-1.1654
1st Qu.
0.2554
Median
0.9893
Mean
1.4892
3rd Qu.
2.337
Max.
7.2204
Std. dev
1.6436
Skewness
1.21
Kurtosis
0.9482
Outliers
350 low · 35 high
Src_1
numeric
1,000
0
-0.7188 – 6.526mean 1.131
Min.
-0.7188
1st Qu.
0.3258
Median
0.8004
Mean
1.1312
3rd Qu.
1.4908
Max.
6.526
Std. dev
1.2348
Skewness
1.758
Kurtosis
3.36
Outliers
720 low · 72 high
Src_2
numeric
1,000
0
-0.6174 – 7.0022mean 1.327
Min.
-0.6174
1st Qu.
0.3698
Median
0.9743
Mean
1.3265
3rd Qu.
1.8212
Max.
7.0022
Std. dev
1.3755
Skewness
1.551
Kurtosis
2.452
Outliers
650 low · 65 high
Src_3
numeric
1,000
0
-0.592 – 7.2124mean 1.292
Min.
-0.592
1st Qu.
0.3221
Median
0.8932
Mean
1.2915
3rd Qu.
1.705
Max.
7.2124
Std. dev
1.4146
Skewness
1.65
Kurtosis
2.68
Outliers
710 low · 71 high
Src_4
numeric
1,000
0
-0.6381 – 6.9204mean 1.301
Min.
-0.6381
1st Qu.
0.3758
Median
0.9852
Mean
1.3007
3rd Qu.
1.772
Max.
6.9204
Std. dev
1.3392
Skewness
1.558
Kurtosis
2.61
Outliers
630 low · 63 high
Src_5
numeric
1,000
0
-0.7409 – 7.0568mean 1.156
Min.
-0.7409
1st Qu.
0.2905
Median
0.7428
Mean
1.1559
3rd Qu.
1.4827
Max.
7.0568
Std. dev
1.3519
Skewness
1.823
Kurtosis
3.382
Outliers
820 low · 82 high
Src_6
numeric
1,000
0
-0.6581 – 6.7475mean 1.255
Min.
-0.6581
1st Qu.
0.3394
Median
0.9015
Mean
1.2552
3rd Qu.
1.6946
Max.
6.7475
Std. dev
1.3497
Skewness
1.576
Kurtosis
2.361
Outliers
700 low · 70 high
Src_7
numeric
1,000
0
-0.6029 – 6.9205mean 1.306
Min.
-0.6029
1st Qu.
0.3405
Median
0.9275
Mean
1.306
3rd Qu.
1.7611
Max.
6.9205
Std. dev
1.3763
Skewness
1.531
Kurtosis
2.25
Outliers
680 low · 68 high
Version history
VersionReleasedSizeChangeStored asConfidence
3.232026-04-281,000 × 55Unchangedrda · gzip
version 2 · 418 KB
exact
3.222025-10-291,000 × 55Unchangedrda · gzip
version 2 · 418 KB
exact
3.212025-04-151,000 × 55Unchangedrda · gzip
version 2 · 418 KB
exact
3.202024-10-291,000 × 55Unchangedrda · gzip
version 2 · 418 KB
exact
3.192024-04-301,000 × 55Unchangedrda · gzip
version 2 · 418 KB
exact
3.182023-10-241,000 × 55Unchangedrda · gzip
version 2 · 418 KB
exact
3.172023-04-251,000 × 55Unchangedrda · gzip
version 2 · 418 KB
exact
3.162022-11-011,000 × 55Unchangedrda · gzip
version 2 · 418 KB
exact
3.152022-04-261,000 × 55Unchangedrda · gzip
version 2 · 418 KB
exact
3.142021-10-261,000 × 55Unchangedrda · gzip
version 2 · 418 KB
exact
3.132021-06-131,000 × 55Unchangedrda · gzip
version 2 · 418 KB
exact
3.122020-10-271,000 × 55Unchangedrda · gzip
version 2 · 418 KB
exact
3.112020-04-271,000 × 55Unchangedrda · gzip
version 2 · 418 KB
exact
3.102019-10-291,000 × 55Unchangedrda · gzip
version 2 · 418 KB
exact
3.92019-05-041,000 × 55Unchangedrda · gzip
version 2 · 418 KB
exact
3.82018-10-301,000 × 55Unchangedrda · gzip
version 2 · 418 KB
exact
3.72018-04-301,000 × 55Unchangedrda · gzip
version 2 · 418 KB
exact
3.62017-10-301,000 × 55Unchangedrda · gzip
version 2 · 418 KB
exact
3.52017-04-241,000 × 55Unchangedrda · gzip
version 2 · 418 KB
exact
3.42016-10-171,000 × 55Unchangedrda · gzip
version 2 · 418 KB
exact
3.32016-05-031,000 × 55Unchangedrda · gzip
version 2 · 418 KB
exact
3.22015-10-131,000 × 55Unchangedrda · gzip
version 2 · 418 KB
exact
3.12015-04-161,000 × 55Unchangedrda · gzip
version 2 · 418 KB
exact
3.02014-10-131,000 × 55Unchangedrda · gzip
version 2 · 418 KB
exact
2.142014-04-111,000 × 55–rda · gzip
version 2 · 418 KB
exact

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