synlet
Bioc currentHits Selection for Synthetic Lethal RNAi Screen Data
Release Lineage
Entered 3.2 · Oct 14, 2015
Current · Requires R 4.6
Description
Select hits from synthetic lethal RNAi screen data. For example, there are two identical celllines except one gene is knocked-down in one cellline. The interest is to find genes that lead to stronger lethal effect when they are knocked-down further by siRNA. Quality control and various visualisation tools are implemented. Four different algorithms could be used to pick up the interesting hits. This package is designed based on 384 wells plates, but may apply to other platforms with proper configuration.
Test coverage
Line coverage
–
Expression
–
Tests / Examples
–
Functions
20 9 exported
Complexity
2.5 avg / 8 max
Call network
20 nodes / 7 edges
Test coverage is not measured for Bioconductor packages; nodes fall back to a neutral fill.
Call graph
Open call graph →Lowest coverage
Per-function coverage is not measured for this package yet.
Code
Structure
Lines of code
1,519
Files
32
Compiled share
0%
Has compiled src
No
Language breakdown
API
Exported functions
9
Internal functions
11
Testing & CI
Has tests
Yes
Test-to-code ratio
0.03
testthat edition
–
CI present
No
CI type
[]
PR gated
No
Docs
Roxygen coverage
100%
Health & Security signals
Informational signals; not verdicts.
on.exit coverage
–
Unsafe pattern score
0
Dep constraint coverage
0%
Secret pattern count
0
Bundled 3rd-party code
2 items
Portability & License
Min R version
–
System requirements
–
C++ standard
–
License
GPL-3
License flags
SPDX valid, OSI approved
History
Versions
22
First release
2015-10-13
Latest release
2026-04-28
Avg cadence
182 days
Cold removal rate
–
Dep drift
10
LOC over versions
Per-file churn detail lives in the source pipeline: https://github.com/r-observatory/bioc-code-metrics.
Documentation
- Examples that run
- 100%
- Documented parameters
- 99%
- Return-value docs
- 100%
- References docs
- 60%
Topics
People
- Chunxuan Shao author maintainer
Cite
Cite this package
Run in R for the authors' preferred citation:
citation("synlet")This is what citation() produces when a package has no citation file of its own. If it prints something else, use that.
Cite the R Observatory
For a number measured here: a download total, a coverage figure, an archival date.
From data release v2026-08-22, which the citation names so these numbers can be found later. More on citing and the projects behind them.