seqsetvis
Bioc currentSet Based Visualizations for Next-Gen Sequencing Data
Release Lineage
Entered 3.7 · May 1, 2018
Current · Requires R 4.6
Description
seqsetvis enables the visualization and analysis of sets of genomic sites in next gen sequencing data. Although seqsetvis was designed for the comparison of mulitple ChIP-seq samples, this package is domain-agnostic and allows the processing of multiple genomic coordinate files (bed-like files) and signal files (bigwig files pileups from bam file). seqsetvis has multiple functions for fetching data from regions into a tidy format for analysis in data.table or tidyverse and visualization via ggplot2.
Test coverage
Line coverage
–
Expression
–
Tests / Examples
–
Functions
89 67 exported
Complexity
5.9 avg / 22 max
Call network
89 nodes / 93 edges
Test coverage is not measured for Bioconductor packages; nodes fall back to a neutral fill.
Call graph
Open call graph →Lowest coverage
Per-function coverage is not measured for this package yet.
Code
Structure
Lines of code
18,176
Files
202
Compiled share
0%
Has compiled src
No
Language breakdown
API
Exported functions
69
Internal functions
22
Recent export changes
Testing & CI
Has tests
Yes
Test-to-code ratio
0.55
testthat edition
–
CI present
Yes
CI type
["travis"]
PR gated
No
Docs
Roxygen coverage
100%
Health & Security signals
Informational signals; not verdicts.
on.exit coverage
0%
Unsafe pattern score
0
Dep constraint coverage
0%
Secret pattern count
0
Bundled 3rd-party code
2 items
Portability & License
Min R version
4.3
System requirements
–
C++ standard
–
License
MIT + file LICENSE
License flags
SPDX valid, OSI approved
History
Versions
17
First release
2018-05-25
Latest release
2026-04-28
Avg cadence
194 days
Cold removal rate
100%
Dep drift
12
LOC over versions
Per-file churn detail lives in the source pipeline: https://github.com/r-observatory/bioc-code-metrics.
Documentation
- Examples that run
- 100%
- Documented parameters
- 99%
- Return-value docs
- 100%
- References docs
- 0%
Topics
People
- Joseph R Boyd author maintainer
Cite
Cite this package
Run in R for the authors' preferred citation:
citation("seqsetvis")This is what citation() produces when a package has no citation file of its own. If it prints something else, use that.
Cite the R Observatory
For a number measured here: a download total, a coverage figure, an archival date.
From data release v2026-08-23, which the citation names so these numbers can be found later. More on citing and the projects behind them.