seqPattern
Bioc currentVisualising oligonucleotide patterns and motif occurrences across a set of sorted sequences
Release Lineage
Entered 3.1 · Apr 17, 2015
Current · Requires R 4.6
Description
Visualising oligonucleotide patterns and sequence motifs occurrences across a large set of sequences centred at a common reference point and sorted by a user defined feature.
Test coverage
Line coverage
–
Expression
–
Tests / Examples
–
Functions
9 0 exported
Complexity
5.7 avg / 24 max
Call network
9 nodes / 3 edges
Test coverage is not measured for Bioconductor packages; nodes fall back to a neutral fill.
Call graph
Open call graph →Lowest coverage
Per-function coverage is not measured for this package yet.
Code
Structure
Lines of code
2,547
Files
40
Compiled share
0%
Has compiled src
No
Language breakdown
API
Exported functions
0
Internal functions
10
Testing & CI
Has tests
Yes
Test-to-code ratio
0.00
testthat edition
–
CI present
No
CI type
[]
PR gated
No
Docs
Roxygen coverage
–
Health & Security signals
Informational signals; not verdicts.
on.exit coverage
0%
Unsafe pattern score
0
Dep constraint coverage
0%
Secret pattern count
0
Bundled 3rd-party code
2 items
Portability & License
Min R version
2.15.0
System requirements
–
C++ standard
–
License
GPL-3
License flags
SPDX valid, OSI approved
History
Versions
23
First release
2015-05-11
Latest release
2026-04-28
Avg cadence
182 days
Cold removal rate
–
Dep drift
0
LOC over versions
Per-file churn detail lives in the source pipeline: https://github.com/r-observatory/bioc-code-metrics.
Topics
Depended on by (2)
Bioconductor (2)
People
Vanja Haberle
Cite
Cite this package
Run in R for the authors' preferred citation:
citation("seqPattern")Cite the R Observatory
For a number measured here: a download total, a coverage figure, an archival date.
From data release v2026-08-23, which the citation names so these numbers can be found later. More on citing and the projects behind them.