R Observatory: Metrics for sapFinder version 1.28.0

Balamuta, James Joseph

doi:10.5281/zenodo.21843040

sapFinder

Bioc removed

A package for variant peptides detection and visualization in shotgun proteomics.

v1.28.0 · GPL-2

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Release Lineage

Entered 2.14 · Apr 14, 2014

Removed after 3.12 · Oct 28, 2020

1.0 In 14 of 49 releases 3.23

Description

sapFinder is developed to automate (1) variation-associated database construction, (2) database searching, (3) post-processing, (4) HTML-based report generation in shotgun proteomics.

Call graph

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Code

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Topics

Software › ResearchField › ImmunoOncology

Software › Technology › MassSpectrometry

Software › ResearchField › Proteomics

Software › AssayDomain › SNP

Software › Technology › Sequencing › RNASeq

Software › WorkflowStep › Visualization

Software › WorkflowStep › ReportWriting

People

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At a glance

Version: 1.28.0
License: GPL-2
Requires R: ≥ 4.0
Entered: 2.14 · Apr 14, 2014
Last seen: 3.12 · Oct 28, 2020

Available on

CRAN r2u Bioconductor autoCRAN COPR

Dependencies

Depends

R (>= 3.0.0)rTANDEM (>= 1.3.5)Bioc

Imports

pheatmap Rcpp (>= 0.10.6)graphicsgrDevicesstatsutils

Suggests

RUnitBiocGenericsBiocBiocStyleBioc

Source & history

Cite

Cite this package

Run in R for the authors' preferred citation:

citation("sapFinder")

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For a number measured here: a download total, a coverage figure, an archival date.

Format

APA

Balamuta, J. J. (2026). R Observatory: Metrics for sapFinder version 1.28.0 [Data set]. HJJB, LLC. Data release v2026-08-24. https://doi.org/10.5281/zenodo.21843040

From data release v2026-08-24, which the citation names so these numbers can be found later. More on citing and the projects behind them.

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