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samExploreR

Bioc removed

samExploreR package: high-performance read summarisation to count vectors with avaliability of sequencing depth reduction simulation

v1.16.0 · GPL-3
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Release Lineage

Entered 3.5 · Apr 25, 2017

Removed after 3.13 · May 20, 2021

1.0 In 9 of 49 releases 3.23

Description

This R package is designed for subsampling procedure to simulate sequencing experiments with reduced sequencing depth. This package can be used to anlayze data generated from all major sequencing platforms such as Illumina GA, HiSeq, MiSeq, Roche GS-FLX, ABI SOLiD and LifeTech Ion PGM Proton sequencers. It supports multiple operating systems incluidng Linux, Mac OS X, FreeBSD and Solaris. Was developed with usage of Rsubread.

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Topics

Software › ResearchField › ImmunoOncology
Software › Technology › Sequencing
Software › BiologicalQuestion › SequenceMatching
Software › Technology › Sequencing › RNASeq
Software › Technology › Sequencing › ChIPSeq
Software › Technology › Sequencing › DNASeq
Software › Technology › Sequencing › WholeGenome
Software › BiologicalQuestion › GeneTarget
Software › WorkflowStep › Alignment
Software › AssayDomain › GeneExpression
Software › AssayDomain › GeneticVariability
Software › BiologicalQuestion › GeneRegulation
Software › WorkflowStep › Preprocessing
Software › BiologicalQuestion › GenomeAnnotation
Software

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