Skip to content

rmelting

Bioc current

R Interface to MELTING 5

v1.28.0 · software · GPL-2 | GPL-3

Release Lineage

Entered 3.9 · May 3, 2019

Current · Requires R 4.6

1.0 In 15 of 49 releases 3.23

Description

R interface to the MELTING 5 program (https://www.ebi.ac.uk/biomodels/tools/melting/) to compute melting temperatures of nucleic acid duplexes along with other thermodynamic parameters.

Test coverage

Line coverage

Expression

Tests / Examples

Functions

6 2 exported

Complexity

19.2 avg / 98 max

Call network

6 nodes / 2 edges

Test coverage is not measured for Bioconductor packages; nodes fall back to a neutral fill.

Loading call graph…

Lowest coverage

Per-function coverage is not measured for this package yet.

Code

Structure

Lines of code

6,344

Files

104

Compiled share

0%

Has compiled src

No

Language breakdown

R 1,677 (26.4%)Tests 1,048 (16.5%)Docs 898 (14.2%)Vignettes 2,721 (42.9%)

API

Exported functions

2

Internal functions

4

Recent export changes

v3.9+2 melting, meltingBatch

Testing & CI

Has tests

Yes

Test-to-code ratio

0.62

testthat edition

CI present

Yes

CI type

["github-actions"]

PR gated

Yes

Docs

Roxygen coverage

100%

Health & Security signals

Informational signals; not verdicts.

on.exit coverage

0%

Unsafe pattern score

2

Dep constraint coverage

50%

Secret pattern count

0

Bundled 3rd-party code

2 items

Portability & License

Min R version

3.6

System requirements

1

C++ standard

License

GPL-2 | GPL-3

License flags

SPDX valid, OSI approved

History

Versions

15

First release

2019-05-02

Latest release

2026-04-28

Avg cadence

182 days

Cold removal rate

Dep drift

0

LOC over versions

v3.9: 6,182 LOCv3.10: 6,182 LOCv3.11: 6,182 LOCv3.12: 6,182 LOCv3.13: 6,125 LOCv3.14: 6,125 LOCv3.15: 6,125 LOCv3.16: 6,344 LOCv3.17: 6,344 LOCv3.18: 6,344 LOCv3.19: 6,344 LOCv3.20: 6,344 LOCv3.21: 6,344 LOCv3.22: 6,344 LOCv3.23: 6,344 LOC

Per-file churn detail lives in the source pipeline: https://github.com/r-observatory/bioc-code-metrics.

Documentation

Documentation
READMEYes · 327 wordsVignettesYes · dynamicpkgdown siteYesNEWSYes · 100% structuredCode of conductNoContributing guideNo
Examples that run
100%
Documented parameters
94%
Return-value docs
100%
References docs
25%

Topics

People

Report a problem with this page →