kissDE
Bioc currentRetrieves Condition-Specific Variants in RNA-Seq Data
Release Lineage
Entered 3.7 · May 1, 2018
Current · Requires R 4.6
Description
Retrieves condition-specific variants in RNA-seq data (SNVs, alternative-splicings, indels). It has been developed as a post-treatment of 'KisSplice' but can also be used with user's own data.
Test coverage
Line coverage
–
Expression
–
Tests / Examples
–
Functions
27 6 exported
Complexity
9.6 avg / 70 max
Call network
27 nodes / 23 edges
Test coverage is not measured for Bioconductor packages; nodes fall back to a neutral fill.
Call graph
Open call graph →Lowest coverage
Per-function coverage is not measured for this package yet.
Code
Structure
Lines of code
5,072
Files
45
Compiled share
0%
Has compiled src
No
Language breakdown
API
Exported functions
6
Internal functions
21
Recent export changes
Testing & CI
Has tests
Yes
Test-to-code ratio
0.07
testthat edition
–
CI present
Yes
CI type
["github-actions"]
PR gated
Yes
Docs
Roxygen coverage
100%
Health & Security signals
Informational signals; not verdicts.
on.exit coverage
0%
Unsafe pattern score
0
Dep constraint coverage
0%
Secret pattern count
0
Bundled 3rd-party code
2 items
Portability & License
Min R version
–
System requirements
–
C++ standard
–
License
GPL (>= 2)
License flags
SPDX valid, OSI approved
History
Versions
17
First release
2018-04-30
Latest release
2026-04-28
Avg cadence
182 days
Cold removal rate
–
Dep drift
13
LOC over versions
Per-file churn detail lives in the source pipeline: https://github.com/r-observatory/bioc-code-metrics.
Documentation
- Examples that run
- 100%
- Documented parameters
- 100%
- Return-value docs
- 100%
- References docs
- 14%
Topics
People
- Aurelie Siberchicot author maintainer
- Clara Benoit-Pilven author
- Lilia Brinza author
- Audric Cologne author
- Laurent Jacob contributor
- Janice Kielbassa author
- Vincent Lacroix author
- Camille Marchet author
- Vincent Miele contributor
- Frank Picard contributor