isomiRs
Bioc currentAnalyze isomiRs and miRNAs from small RNA-seq
Release Lineage
Entered 3.3 · May 4, 2016
Current · Requires R 4.6
Description
Characterization of miRNAs and isomiRs, clustering and differential expression.
None published for Bioconductor
Test coverage
Line coverage
–
Expression
–
Tests / Examples
–
Functions
33 11 exported
Complexity
2.2 avg / 8 max
Call network
33 nodes / 27 edges
Test coverage is not measured for Bioconductor packages; nodes fall back to a neutral fill.
Call graph
Open call graph →Lowest coverage
Per-function coverage is not measured for this package yet.
Code
Structure
Lines of code
3,472
Files
156
Compiled share
0%
Has compiled src
No
Language breakdown
API
Exported functions
11
Internal functions
22
Recent export changes
Testing
Has tests
Yes
Test-to-code ratio
0.03
testthat edition
–
Docs
Roxygen coverage
100%
Health & Security signals
Informational signals; not verdicts.
on.exit coverage
–
Unsafe pattern score
0
Dep constraint coverage
0%
Secret pattern count
0
Bundled 3rd-party code
2 items
Portability & License
Min R version
4.4
System requirements
–
C++ standard
–
License
MIT + file LICENSE
License flags
SPDX valid, OSI approved
History
Versions
21
First release
2016-06-01
Latest release
2026-04-28
Avg cadence
182 days
Cold removal rate
100%
Dep drift
35
LOC over versions
Per-file churn detail lives in the source pipeline: https://github.com/r-observatory/bioc-code-metrics.
Documentation
- Help pages
- 23includes a package overview page
- Examples that run
- 100%14 run in a plain check
- Exported functions with examples
- 91%
- Documented parameters
- 100%
- Return-value docs
- 91%
- Help pages citing references
- 4%
Repository practices
7 development-tooling and community-health practices detected across 3 families in the upstream repository
Checks run against github.com/lpantano/isomirs on 2026-10-22.
The R CMD check workflow runs on Linux, macOS and Windows, and on R-devel
GitHub Pages site last deployed 2025-12-23 · The repository has a site deploy workflow
Datasets
| Name | Class | Size | Also in |
|---|---|---|---|
| dat286.long | data.frame | 13,728 × 9 | No other package |
| ego | data.frame | 424 × 9 | No other package |
| gene_ex_rse | – | – | – |
| ma_ex | data.frame | 25 × 20 | No other package |
| mirData | – | – | – |
| mirTritation | data.frame | 2,860 × 10 | No other package |
| mirna_ex_rse | – | – | – |
Topics
People
- Lorena Pantano author maintainer
-
Georgia Escaramis
author
CIBERESP - CIBER Epidemiologia y Salud Publica
Cite
Cite this package
Run in R for the authors' preferred citation:
citation("isomiRs")This package has no citation file, so citation() returns this entry built from DESCRIPTION.
Cite the R Observatory
For a number measured here: a download total, a coverage figure, an archival date.
From data release v2026-10-25, which the citation names so these numbers can be found later. More on citing and the projects behind them.