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iscream

Bioc current

Make fast and memory efficient BED file queries, summaries and matrices

v1.2.0 · software · MIT + file LICENSE
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Release Lineage

Entered 3.22 · Oct 30, 2025

Current · Requires R 4.6

1.0 In 2 of 49 releases 3.23

Description

BED files store ranged genomic data that can be queried even when the files are compressed. iscream can query data from BED files and return them in muliple formats: parsed records or their summary statistics as data frames or GenomicRanges objects, and matrices as matrix, GenomicRanges, or SummarizedExperiment objects. iscream also provides specialized support for importing methylation data.

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Topics

Software › Infrastructure › DataImport
Software
Software › Technology › Sequencing
Software › Technology › SingleCell
Software › AssayDomain › DNAMethylation

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