iCheck
Bioc currentQC Pipeline and Data Analysis Tools for High-Dimensional Illumina mRNA Expression Data
Release Lineage
Entered 3.2 · Oct 14, 2015
Current · Requires R 4.6
Description
QC pipeline and data analysis tools for high-dimensional Illumina mRNA expression data.
Test coverage
Line coverage
–
Expression
–
Tests / Examples
–
Functions
44 19 exported
Complexity
10.2 avg / 58 max
Call network
44 nodes / 40 edges
Test coverage is not measured for Bioconductor packages; nodes fall back to a neutral fill.
Call graph
Open call graph →Lowest coverage
Per-function coverage is not measured for this package yet.
Code
Structure
Lines of code
7,814
Files
35
Compiled share
0%
Has compiled src
No
Language breakdown
API
Exported functions
19
Internal functions
25
Testing & CI
Has tests
No
Test-to-code ratio
0.00
testthat edition
–
CI present
No
CI type
[]
PR gated
No
Docs
Roxygen coverage
100%
Health & Security signals
Informational signals; not verdicts.
on.exit coverage
0%
Unsafe pattern score
3
Dep constraint coverage
0%
Secret pattern count
0
Bundled 3rd-party code
2 items
Portability & License
Min R version
3.2.0
System requirements
–
C++ standard
–
License
GPL (>= 2)
License flags
SPDX valid, OSI approved
History
Versions
22
First release
2015-10-13
Latest release
2026-04-28
Avg cadence
182 days
Cold removal rate
–
Dep drift
2
LOC over versions
Per-file churn detail lives in the source pipeline: https://github.com/r-observatory/bioc-code-metrics.
Documentation
- Examples that run
- 100%
- Documented parameters
- 99%
- Return-value docs
- 100%
- References docs
- 21%
Topics
People
- Weiliang Qiu author maintainer
- Christopher Anderson author contributor
- Vincent Carey author contributor
- Brandon Guo author contributor
- Barbara Klanderman author contributor
- Benjamin Raby author contributor
Cite
Cite this package
Run in R for the authors' preferred citation:
citation("iCheck")This is what citation() produces when a package has no citation file of its own. If it prints something else, use that.
Cite the R Observatory
For a number measured here: a download total, a coverage figure, an archival date.
From data release v2026-08-24, which the citation names so these numbers can be found later. More on citing and the projects behind them.