hdxmsqc
Bioc currentAn R package for quality Control for hydrogen deuterium exchange mass spectrometry experiments
Release Lineage
Entered 3.19 · May 1, 2024
Current · Requires R 4.6
Description
The hdxmsqc package enables us to analyse and visualise the quality of HDX-MS experiments. Either as a final quality check before downstream analysis and publication or as part of a interative procedure to determine the quality of the data. The package builds on the QFeatures and Spectra packages to integrate with other mass-spectrometry data.
Test coverage
Line coverage
–
Expression
–
Tests / Examples
–
Functions
24 0 exported
Complexity
4.7 avg / 26 max
Call network
24 nodes / 11 edges
Test coverage is not measured for Bioconductor packages; nodes fall back to a neutral fill.
Call graph
Open call graph →Lowest coverage
Per-function coverage is not measured for this package yet.
Code
Structure
Lines of code
2,838
Files
46
Compiled share
0%
Has compiled src
No
Language breakdown
API
Exported functions
23
Internal functions
0
Recent export changes
Testing & CI
Has tests
Yes
Test-to-code ratio
0.06
testthat edition
–
CI present
No
CI type
[]
PR gated
No
Docs
Roxygen coverage
–
Health & Security signals
Informational signals; not verdicts.
on.exit coverage
–
Unsafe pattern score
0
Dep constraint coverage
0%
Secret pattern count
0
Bundled 3rd-party code
2 items
Portability & License
Min R version
4.3
System requirements
–
C++ standard
–
License
file LICENSE
License flags
SPDX valid, not OSI
History
Versions
5
First release
2024-07-03
Latest release
2026-04-28
Avg cadence
175 days
Cold removal rate
–
Dep drift
0
LOC over versions
Per-file churn detail lives in the source pipeline: https://github.com/r-observatory/bioc-code-metrics.
Topics
People
- Oliver M. Crook author maintainer
Cite
Cite this package
Run in R for the authors' preferred citation:
citation("hdxmsqc")This is what citation() produces when a package has no citation file of its own. If it prints something else, use that.
Cite the R Observatory
For a number measured here: a download total, a coverage figure, an archival date.
From data release v2026-08-22, which the citation names so these numbers can be found later. More on citing and the projects behind them.