R Observatory: Metrics for dtangle version 2.0.10

Balamuta, James Joseph

doi:10.5281/zenodo.21843040

dtangle

2.0.10

Cell Type Deconvolution from Gene Expressions

0packages depend

4.1Kdownloads / year

0.0%test coverage

10/13checks pass

Overview

About

Maintained by Gregory HuntFirst published 2017-05-305 releasesCRAN page ↗

Deconvolving cell types from high-throughput gene profiling data. For more information on dtangle see Hunt et al. (2019) doi:10.1093/bioinformatics/bty926.

Install

R (CRAN)Ubuntu (r2u)Fedora (COPR)openSUSE (OBS)

install.packages("dtangle", repos = "https://cloud.r-project.org/")

Installs the current CRAN release. Prebuilt binaries on Windows and macOS.

Release

# enable cranapt (r2u) if it is not already set up, then install
grep -rqs r2u.stat.illinois.edu /etc/apt/sources.list /etc/apt/sources.list.d/ \
  || curl -fsSL https://raw.githubusercontent.com/eddelbuettel/r2u/master/inst/scripts/add_cranapt_noble.sh | sudo bash
sudo apt install -y r-cran-dtangle

Fast Ubuntu binaries via r2u (no compilation). The cranapt setup runs once and is skipped when it is already enabled.

bspm (used by r2u) also needs make: sudo apt install make

# enable the iucar/cran COPR if it is not already present, then install
ls /etc/yum.repos.d/*iucar*cran*.repo >/dev/null 2>&1 \
  || sudo dnf copr enable -y iucar/cran
sudo dnf install -y R-CRAN-dtangle

RPMs from the iucar/cran COPR, rebuilt from CRAN.

For install.packages() integration in R, also: sudo dnf install R-CoprManager

# add the autoCRAN OBS repo (Tumbleweed) if it is missing, then install
zypper -q lr | grep -qi autoCRAN \
  || sudo zypper addrepo https://download.opensuse.org/repositories/devel:/languages:/R:/autoCRAN/openSUSE_Tumbleweed/devel:languages:R:autoCRAN.repo
sudo zypper install -y R-dtangle

RPMs auto-built from CRAN on openSUSE OBS (Tumbleweed).

Health

CRAN checks

3NOTE10OK

Failing flavors

NOTE r-devel-linux-x86_64-debian-clang
NOTE r-devel-windows-x86_64
NOTE r-patched-linux-x86_64

Slowest check: 19.0 min · r-devel-windows-x86_64

Code health

Yes

Tests · ratio 0.40

0.0%

Coverage · measured lines

100%

Documentation · exports

1

Dependencies · direct

Check history

NOTE2026-06-09
0 OK · 13 NOTE · 0 WARNING · 0 ERROR · 0 FAILURE
ERROR2026-06-08
0 OK · 12 NOTE · 0 WARNING · 1 ERROR · 0 FAILURE
NOTE2026-03-10
0 OK · 14 NOTE · 0 WARNING · 0 ERROR · 0 FAILURE

Documentation

READMENoVignettesYes · dynamicpkgdown siteNoNEWSNoCode of conductNoContributing guideNo

Examples that run: 80%
Documented parameters: 98%
Return-value docs: 100%
References docs: 0%

Downloads

4.1K

CRAN downloads in the past year

Rank #9,172 · ~11/day · ~345/mo

Releases R versions

Daily download trend is not available in this view yet.

28230 days

1K90 days

4.1K1 year

Compare downloads with other packages →

Also on100 r2u31 autocran1.2K conda_forge

Dependencies

Declared dependencies

4 external dependencies (excludes base and recommended)

Depends (1)

R >= 3.5.0

Imports (1)

DEoptimR

LinkingTo (0)

none

Suggests (3)

knitr rmarkdown testthat

Enhances (0)

none

Dependency license breakdown →

Reverse dependencies

0direct

0indirect

Nothing depends on this yet.

Code & Tests

Datasets

People & History

People (2)

Maintainer (1)

Gregory Hunt

Author, Maintainer

Authors (2)

Gregory Hunt

Author, Maintainer

Johann Gagnon-Bartsch

Author · added in 2.0.9

Package Timeline

5 releases. Pick two to compare their code metrics. R releases are shown for context.

2.0.10Latest
2026-08-22 · current release · diff ↗
R
R 4.6.0 released · 2026-04-24
R
R 4.5.0 released · 2025-04-11
R
R 4.4.0 released · 2024-04-24
R
R 4.3.0 released · 2023-04-21
R
R 4.2.0 released · 2022-04-22
R
R 4.1.0 released · 2021-05-18
R
R 4.0.0 released · 2020-04-24
2.0.9
2019-12-01 · diff ↗
R
R 3.6.0 released · 2019-04-26
0.3.1
2018-11-09 · diff ↗
0.3.0
2018-07-05 · diff ↗
R
R 3.5.0 released · 2018-04-23
0.1.0
2017-05-30
R
R 3.4.0 released · 2017-04-21

Package metadata

First published: 2017-05-30
Total releases: 5 / 9 yrs
License: GPL-3 OSI
Minimum R: ≥ 3.5.0
Bundled data: 188 KB / 1 file
Download size: 590 KB
Installed size: not tracked yet
With dependencies: not tracked yet

Cite

Cite this package

Run in R for the authors' preferred citation:

citation("dtangle")

Format

Hunt, G., & Gagnon-Bartsch, J. (2026). dtangle: Cell Type Deconvolution from Gene Expressions (Version 2.0.10) [Computer software]. https://doi.org/10.32614/CRAN.package.dtangle

This is what citation() produces when a package has no citation file of its own. If it prints something else, use that.

Cite the R Observatory

For a number measured here: a download total, a coverage figure, an archival date.

Format

APA

Balamuta, J. J. (2026). R Observatory: Metrics for dtangle version 2.0.10 [Data set]. HJJB, LLC. Data release v2026-08-23. https://doi.org/10.5281/zenodo.21843040

From data release v2026-08-23, which the citation names so these numbers can be found later. More on citing and the projects behind them.

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