dagLogo
Bioc currentdagLogo: a Bioconductor package for visualizing conserved amino acid sequence pattern in groups based on probability theory
Release Lineage
Entered 2.13 · Oct 15, 2013
Current · Requires R 4.6
Description
Visualize significant conserved amino acid sequence pattern in groups based on probability theory.
Test coverage
Line coverage
–
Expression
–
Tests / Examples
–
Functions
20 14 exported
Complexity
9.2 avg / 39 max
Call network
20 nodes / 10 edges
Test coverage is not measured for Bioconductor packages; nodes fall back to a neutral fill.
Call graph
Open call graph →Lowest coverage
Per-function coverage is not measured for this package yet.
Code
Structure
Lines of code
4,691
Files
64
Compiled share
0%
Has compiled src
No
Language breakdown
API
Exported functions
14
Internal functions
6
Recent export changes
Testing & CI
Has tests
Yes
Test-to-code ratio
0.02
testthat edition
–
CI present
No
CI type
[]
PR gated
No
Docs
Roxygen coverage
100%
Health & Security signals
Informational signals; not verdicts.
on.exit coverage
0%
Unsafe pattern score
0
Dep constraint coverage
0%
Secret pattern count
0
Bundled 3rd-party code
2 items
Portability & License
Min R version
3.0.1
System requirements
–
C++ standard
–
License
GPL (>=2)
License flags
not SPDX, not OSI
History
Versions
26
First release
2013-10-14
Latest release
2026-04-28
Avg cadence
182 days
Cold removal rate
100%
Dep drift
9
LOC over versions
Per-file churn detail lives in the source pipeline: https://github.com/r-observatory/bioc-code-metrics.
Documentation
- Examples that run
- 100%
- Documented parameters
- 89%
- Return-value docs
- 100%
- References docs
- 0%
Topics
People
Jianhong Ou
Cite
Cite this package
Run in R for the authors' preferred citation:
citation("dagLogo")Cite the R Observatory
For a number measured here: a download total, a coverage figure, an archival date.
From data release v2026-08-22, which the citation names so these numbers can be found later. More on citing and the projects behind them.