consensusSeekeR
Bioc currentDetection of consensus regions inside a group of experiences using genomic positions and genomic ranges
Release Lineage
Entered 3.3 · May 4, 2016
Current · Requires R 4.6
Description
This package compares genomic positions and genomic ranges from multiple experiments to extract common regions. The size of the analyzed region is adjustable as well as the number of experiences in which a feature must be present in a potential region to tag this region as a consensus region. In genomic analysis where feature identification generates a position value surrounded by a genomic range, such as ChIP-Seq peaks and nucleosome positions, the replication of an experiment may result in slight differences between predicted values. This package enables the conciliation of the results into consensus regions.
None published for Bioconductor
Test coverage
Line coverage
–
Expression
–
Tests / Examples
–
Functions
6 2 exported
Complexity
11 avg / 26 max
Call network
6 nodes / 3 edges
Test coverage is not measured for Bioconductor packages; nodes fall back to a neutral fill.
Call graph
Open call graph →Lowest coverage
Per-function coverage is not measured for this package yet.
Code
Structure
Lines of code
5,738
Files
75
Compiled share
0%
Has compiled src
No
Language breakdown
API
Exported functions
2
Internal functions
4
Testing
Has tests
Yes
Test-to-code ratio
0.00
testthat edition
–
Docs
Roxygen coverage
100%
Health & Security signals
Informational signals; not verdicts.
on.exit coverage
–
Unsafe pattern score
0
Dep constraint coverage
0%
Secret pattern count
0
Bundled 3rd-party code
2 items
Portability & License
Min R version
3.5.0
System requirements
–
C++ standard
–
License
Artistic-2.0
License flags
SPDX valid, OSI approved
History
Versions
21
First release
2016-05-15
Latest release
2026-04-28
Avg cadence
182 days
Cold removal rate
–
Dep drift
3
LOC over versions
Per-file churn detail lives in the source pipeline: https://github.com/r-observatory/bioc-code-metrics.
Documentation
- Help pages
- 27 (4 internal)includes a package overview page
- Examples that run
- 100%23 run in a plain check
- Exported functions with examples
- 100%
- Documented parameters
- 100%
- Return-value docs
- 100%
- Help pages citing references
- 74%
Repository practices
7 development-tooling and community-health practices detected across 4 families in the upstream repository
Checks run against github.com/adeschen/consensusseeker on 2026-10-21.
The R CMD check workflow runs on Linux, macOS and Windows, and on R-devel
GitHub Pages site last deployed 2025-10-15 · The repository has a site deploy workflow
Datasets
Topics
Depended on by (1)
Bioconductor (1)
Suggested by (1)
People
- Astrid Deschênes maintainer author
- Pascal Belleau author
- Arnaud Droit author
- Fabien Claude Lamaze contributor
Cite
Cite this package
Run in R for the authors' entry:
citation("consensusSeekeR")The package provides a citation file, so citation() returns the authors' own entry.
It points to 10.1515/sagmb-2014-0098.
Cite the R Observatory
For a number measured here: a download total, a coverage figure, an archival date.
From data release v2026-10-25, which the citation names so these numbers can be found later. More on citing and the projects behind them.