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coRdon

Bioc current

Codon Usage Analysis and Prediction of Gene Expressivity

v1.30.0 · software · Artistic-2.0
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Release Lineage

Entered 3.8 · Oct 31, 2018

Current · Requires R 4.6

1.0 In 16 of 49 releases 3.23

Description

Tool for analysis of codon usage in various unannotated or KEGG/COG annotated DNA sequences. Calculates different measures of CU bias and CU-based predictors of gene expressivity, and performs gene set enrichment analysis for annotated sequences. Implements several methods for visualization of CU and enrichment analysis results.

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Topics

Software
Software › ResearchField › Metagenomics
Software › AssayDomain › GeneExpression
Software › BiologicalQuestion › GeneSetEnrichment
Software › BiologicalQuestion › GenePrediction
Software › WorkflowStep › Visualization
Software › WorkflowStep › Pathways › KEGG
Software › WorkflowStep › Pathways
Genetics CellBiology
Software › ResearchField › BiomedicalInformatics
Software › ResearchField › Immunology › ImmunoOncology

Depended on by (1)

CRAN (1)

vhcub

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