cellxgenedp
Bioc currentDiscover and Access Single Cell Data Sets in the CELLxGENE Data Portal
Release Lineage
Entered 3.15 · Apr 27, 2022
Current · Requires R 4.6
Description
The cellxgene data portal (https://cellxgene.cziscience.com/) provides a graphical user interface to collections of single-cell sequence data processed in standard ways to 'count matrix' summaries. The cellxgenedp package provides an alternative, R-based inteface, allowind data discovery, viewing, and downloading.
None published for Bioconductor
Test coverage
Line coverage
–
Expression
–
Tests / Examples
–
Functions
46 12 exported
Complexity
1.7 avg / 6 max
Call network
46 nodes / 65 edges
Test coverage is not measured for Bioconductor packages; nodes fall back to a neutral fill.
Call graph
Open call graph →Lowest coverage
Per-function coverage is not measured for this package yet.
Code
Structure
Lines of code
2,508
Files
29
Compiled share
0%
Has compiled src
No
Language breakdown
API
Exported functions
13
Internal functions
0
Testing
Has tests
Yes
Test-to-code ratio
0.29
testthat edition
3
Docs
Roxygen coverage
100%
Health & Security signals
Informational signals; not verdicts.
on.exit coverage
0%
Unsafe pattern score
0
Dep constraint coverage
0%
Secret pattern count
0
Bundled 3rd-party code
2 items
Portability & License
Min R version
–
System requirements
–
C++ standard
–
License
Artistic-2.0
License flags
SPDX valid, OSI approved
History
Versions
9
First release
2022-08-22
Latest release
2026-04-28
Avg cadence
182 days
Cold removal rate
100%
Dep drift
4
LOC over versions
Per-file churn detail lives in the source pipeline: https://github.com/r-observatory/bioc-code-metrics.
Documentation
- Help pages
- 4
- Examples that run
- 75%3 run in a plain check · 1 only when donttest examples are enabled (R CMD check --as-cran)
- Exported functions with examples
- 100%
- Documented parameters
- 100%
- Return-value docs
- 100%
- Help pages citing references
- 0%
- Discovery and retrieval HTML
- Case studies HTML
Repository practices
4 development-tooling and community-health practices detected across 2 families in the upstream repository
Checks run against github.com/mtmorgan/cellxgenedp on 2026-10-22.
GitHub Pages site last deployed 2026-06-14 · The repository has a site deploy workflow
pkgdown site last built 2026-06-14
Topics
People
- Martin Morgan author maintainer
- Kayla Interdonato author
Cite
Cite this package
Run in R for the authors' preferred citation:
citation("cellxgenedp")This package has no citation file, so citation() returns this entry built from DESCRIPTION.
Cite the R Observatory
For a number measured here: a download total, a coverage figure, an archival date.
From data release v2026-10-25, which the citation names so these numbers can be found later. More on citing and the projects behind them.