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brendaDb

Bioc current

The BRENDA Enzyme Database

v1.26.0 · software · MIT + file LICENSE

Release Lineage

Entered 3.10 · Oct 30, 2019

Current · Requires R 4.6

1.0 In 14 of 49 releases 3.23

Description

R interface for importing and analyzing enzyme information from the BRENDA database.

Test coverage

Line coverage

Expression

Tests / Examples

Functions

35 8 exported

Complexity

2.7 avg / 7 max

Call network

35 nodes / 36 edges

Test coverage is not measured for Bioconductor packages; nodes fall back to a neutral fill.

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Lowest coverage

Per-function coverage is not measured for this package yet.

Code

Structure

Lines of code

3,034

Files

70

Compiled share

5.3%

Has compiled src

Yes

Language breakdown

R 1,419 (46.8%)C/C++/src 162 (5.3%)Tests 348 (11.5%)Docs 944 (31.1%)Vignettes 161 (5.3%)

API

Exported functions

8

Internal functions

22

Testing & CI

Has tests

Yes

Test-to-code ratio

0.25

testthat edition

CI present

Yes

CI type

["travis","appveyor"]

PR gated

No

Docs

Roxygen coverage

100%

Health & Security signals

Informational signals; not verdicts.

on.exit coverage

Unsafe pattern score

0

Dep constraint coverage

0%

Secret pattern count

0

Bundled 3rd-party code

2 items

Portability & License

Min R version

System requirements

1

C++ standard

License

MIT + file LICENSE

License flags

SPDX valid, OSI approved

History

Versions

14

First release

2019-10-29

Latest release

2026-04-28

Avg cadence

182 days

Cold removal rate

100%

Dep drift

2

LOC over versions

v3.10: 3,220 LOCv3.11: 3,284 LOCv3.12: 3,284 LOCv3.13: 3,284 LOCv3.14: 3,303 LOCv3.15: 3,303 LOCv3.16: 3,209 LOCv3.17: 3,034 LOCv3.18: 3,034 LOCv3.19: 3,034 LOCv3.20: 3,034 LOCv3.21: 3,034 LOCv3.22: 3,034 LOCv3.23: 3,034 LOC

Per-file churn detail lives in the source pipeline: https://github.com/r-observatory/bioc-code-metrics.

Documentation

Documentation
READMEYes · 116 wordsVignettesYes · dynamicpkgdown siteNoNEWSYes · 100% structuredCode of conductNoContributing guideNo
Examples that run
94%
Documented parameters
100%
Return-value docs
100%
References docs
0%

Topics

People

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