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VplotR

Bioc current

Set of tools to make V-plots and compute footprint profiles

v1.22.0 · software · GPL (>= 3)
View on Bioconductor ↗ Source ↗

Release Lineage

Entered 3.12 · Oct 28, 2020

Current · Requires R 4.6

1.0 In 12 of 49 releases 3.23

Description

The pattern of digestion and protection from DNA nucleases such as DNAse I, micrococcal nuclease, and Tn5 transposase can be used to infer the location of associated proteins. This package contains useful functions to analyze patterns of paired-end sequencing fragment density. VplotR facilitates the generation of V-plots and footprint profiles over single or aggregated genomic loci of interest.

Code

Code metrics have not been computed for this package yet.

Topics

Software › BiologicalQuestion › NucleosomePositioning
Software › BiologicalQuestion › Coverage
Software › Technology › Sequencing
Software › BiologicalQuestion
Software › Technology › Sequencing › ATACSeq
Software › WorkflowStep › Alignment

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