TPP2D
Bioc currentDetection of ligand-protein interactions from 2D thermal profiles (DLPTP)
Release Lineage
Entered 3.9 · May 3, 2019
Current · Requires R 4.6
Description
Detection of ligand-protein interactions from 2D thermal profiles (DLPTP), Performs an FDR-controlled analysis of 2D-TPP experiments by functional analysis of dose-response curves across temperatures.
None published for Bioconductor
Test coverage
Line coverage
–
Expression
–
Tests / Examples
–
Functions
74 30 exported
Complexity
2.5 avg / 14 max
Call network
74 nodes / 76 edges
Test coverage is not measured for Bioconductor packages; nodes fall back to a neutral fill.
Call graph
Open call graph →Lowest coverage
Per-function coverage is not measured for this package yet.
Code
Structure
Lines of code
6,264
Files
77
Compiled share
0%
Has compiled src
No
Language breakdown
API
Exported functions
31
Internal functions
42
Recent export changes
Testing
Has tests
Yes
Test-to-code ratio
0.05
testthat edition
–
Docs
Roxygen coverage
100%
Health & Security signals
Informational signals; not verdicts.
on.exit coverage
–
Unsafe pattern score
0
Dep constraint coverage
0%
Secret pattern count
0
Bundled 3rd-party code
2 items
Portability & License
Min R version
3.6.0
System requirements
–
C++ standard
–
License
GPL-3
License flags
SPDX valid, OSI approved
History
Versions
15
First release
2019-05-02
Latest release
2026-04-28
Avg cadence
182 days
Cold removal rate
100%
Dep drift
3
LOC over versions
Per-file churn detail lives in the source pipeline: https://github.com/r-observatory/bioc-code-metrics.
Documentation
- Help pages
- 36 (2 internal)
- Examples that run
- 100%31 run in a plain check
- Exported functions with examples
- 100%
- Documented parameters
- 99%
- Return-value docs
- 100%
- Help pages citing references
- 0%
Repository practices
Checks read the Bioconductor git repository (git.bioconductor.org), branch RELEASE_3_23.
3 practices detected in the Bioconductor git repository
Datasets
| Name | Class | Size | Also in |
|---|---|---|---|
| config_tab | data.frame | 12 × 14 | No other package |
| raw_dat_list | list | 6 elements | No other package |
| simulated_cell_extract_df | tibble | 820 × 15 | No other package |
1 internal object is bundled for the package's own use and not listed here.
Topics
People
- Nils Kurzawa author maintainer
- Simon Anders author
- Holger Franken author
- Wolfgang Huber author
- Mikhail M. Savitski author
Cite
Cite this package
Run in R for the authors' entry:
citation("TPP2D")The package provides a citation file, so citation() returns the authors' own entry.
It points to 10.1038/s41467-020-19529-8.
Cite the R Observatory
For a number measured here: a download total, a coverage figure, an archival date.
From data release v2026-10-25, which the citation names so these numbers can be found later. More on citing and the projects behind them.