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SurfR

Bioc current

Surface Protein Prediction and Identification

v1.8.0 · software · GPL-3 + file LICENSE
View on Bioconductor ↗ Source ↗

Release Lineage

Entered 3.19 · May 1, 2024

Current · Requires R 4.6

1.0 In 5 of 49 releases 3.23

Description

Identify Surface Protein coding genes from a list of candidates. Systematically download data from GEO and TCGA or use your own data. Perform DGE on bulk RNAseq data. Perform Meta-analysis. Descriptive enrichment analysis and plots.

Code

Code metrics have not been computed for this package yet.

Topics

Software
Software › Technology › Sequencing
Software › Technology › Sequencing › RNASeq
Software › AssayDomain › GeneExpression
Software › AssayDomain › Transcription
Software › BiologicalQuestion › DifferentialExpression
Software › StatisticalMethod › PrincipalComponent
Software › BiologicalQuestion › GeneSetEnrichment
Software › WorkflowStep › Pathways
Software › WorkflowStep › BatchEffect
Software › ResearchField › FunctionalGenomics
Software › WorkflowStep › Visualization
Software › Infrastructure › DataImport
Software › BiologicalQuestion › FunctionalPrediction
Software › BiologicalQuestion › GenePrediction
Software › WorkflowStep › Pathways › GO

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