Skip to content

SpatialExperimentIO

Bioc current

Read in Xenium, CosMx, MERSCOPE or STARmapPLUS data as SpatialExperiment object

v1.4.0 · software · Artistic-2.0
View on Bioconductor ↗ Source ↗

Release Lineage

Entered 3.21 · Apr 16, 2025

Current · Requires R 4.6

1.0 In 3 of 49 releases 3.23

Description

Read in imaging-based spatial transcriptomics technology data. Current available modules are for Xenium by 10X Genomics, CosMx by Nanostring, MERSCOPE by Vizgen, or STARmapPLUS from Broad Institute. You can choose to read the data in as a SpatialExperiment or a SingleCellExperiment object.

Code & tests

Open call graph →

Code intelligence has not been computed for this package yet.

Code

Code metrics have not been computed for this package yet.

Topics

Software › Infrastructure › DataRepresentation
Software › Infrastructure › DataImport
Software › Infrastructure
Software › ResearchField › Transcriptomics
Software › Technology › SingleCell
Software › Technology › Spatial
Software › AssayDomain › GeneExpression

Depended on by (4)

Bioconductor (4)

Battlefield OSTA.data SpaceTrooper OSTA

People